CF834523

Overview
NameCF834523
Unique NameCF834523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_HUMAN (DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.227e-47
Identity = 97/181 (53.59%), Postives = 128/181 (70.72%), Query Frame = 2
Query:    2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFS 538
            +K L  DGT T   +R K +N FQ+     +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T E K   RYFS+Q+LREL ++  +    S+TQ QL   H  Q   D  L+ HI +L +LGIAG+S H L+++
Sbjct:  501 FKTLRIDGTVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFSKQELRELFTI--EDLQNSVTQLQLQSLHAAQRKSDIKLDEHIAYLQSLGIAGISDHDLMYT 679          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_BOVIN (DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.227e-47
Identity = 96/182 (52.75%), Postives = 130/182 (71.43%), Query Frame = 2
Query:    2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541
            +K L  DGT T   +R K ++ FQ+     +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T + K   RYFS+Q+LREL ++  + F  S TQ QL   H  Q   D++L+ HI FL +L IAG+S H L++++
Sbjct:  503 FKILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFTI--EDFQNSATQLQLQSLHAAQRRSDKNLDEHIAFLHSLRIAGISDHDLMYTR 682          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_MOUSE (DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.992e-46
Identity = 96/182 (52.75%), Postives = 126/182 (69.23%), Query Frame = 2
Query:    2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541
            +K L  DGT T   +R K +  FQ+     +FLLT+QVGG+GLTLT A RV++ DP+WNP+TD Q+VDR YRIGQK++VVVYRL+TCGTVEEKIYR+Q+FK  L +  T E K   RYF++Q+L+EL ++       S TQ QL   H  Q   DE L+ HI +L  LGIAG+S H L+F++
Sbjct:  504 FKTLRIDGTVTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPFRYFTKQELKELFTV--GDLQKSATQMQLQCLHAAQRRSDEKLDEHIAYLHLLGIAGISDHDLMFTR 683          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERC6L_DANRE (DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44
Identity = 92/182 (50.55%), Postives = 127/182 (69.78%), Query Frame = 2
Query:    2 YKFLLFDGT-TKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTAT-EHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEEHGDQHNMDESLEAHIQFLDTLGIAGVSHHSLLFSK 541
            ++ L  DGT T+ ++R K ++ FQ      IFLLT+QVGG+G+TLT A+RV++ DP+WNP+TD Q+VDRAYRIGQ ++V++YRL+TCGTVEEKIYR+Q+FK  L +  T + K   RYFS+Q+LREL  L  +    S TQQQL   H      D SL+ HI  L ++ + G+S H L+F+K
Sbjct:  516 FRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPFRYFSKQELRELFKL--EDTRSSSTQQQLQAMHAQSRRSDTSLDHHIARLHSMEMFGISDHDLMFTK 695          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RHP26_SCHPO (DNA repair protein rhp26 OS=Schizosaccharomyces pombe GN=rhp26 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.790e-31
Identity = 66/122 (54.10%), Postives = 89/122 (72.95%), Query Frame = 2
Query:   20 DGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            DG+T  + R  +V++F + +   +FLLT++VGGLG+ LT ADRVI+ DP WNPSTD Q+ +RA+R+GQKKDVVVYRLMT GT+EEKIY +QIFK  L     +  +Q R+F   DL +L +L
Sbjct:  673 DGSTSIALRQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTL 794          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: ERCC6_HUMAN (DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.067e-30
Identity = 65/128 (50.78%), Postives = 87/128 (67.97%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSL 385
            Y +L  DGTT  + R  ++  + E     +FLLT++VGGLG+ LT A+RV++ DP WNPSTD Q+ +RA+RIGQKK V VYRL+T GT+EEKIY +QIFK  L     +  +Q R+F   DL EL +L
Sbjct:  880 YTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTL 1007          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD26_YEAST (DNA repair and recombination protein RAD26 OS=Saccharomyces cerevisiae GN=RAD26 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.456e-28
Identity = 72/173 (41.62%), Postives = 107/173 (61.85%), Query Frame = 2
Query:    8 FLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQIRYFSQQDLRELLSLPKQGFDVSLTQQQLHEE---HGDQHNMDESLEAHIQFLDTLGIAGVS 517
            +L  DGTT    R  +V+ F   +   +FLLT++VGGLG+ LT A+R+I+ DP WNPSTD Q+ +RA+RIGQK++V +YRLM  G++EEKIY +QIFK  L        +Q R+F   +L +L SL   G +   + ++L+EE   H +     +S E+   F   + ++GVS
Sbjct:  699 YLRMDGTTNIKGRQSLVDRFNN-ESFDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPSTDMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHELHDLFSL---GGENGYSTEELNEEVQKHTENLKNSKSEESD-DFEQLVNLSGVS 866          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_COCIM (Putative DNA helicase INO80 OS=Coccidioides immitis GN=INO80 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.383e-22
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+   DG+TK  DR   V+DFQ+     +FLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ K V VYRL+T GT+EE+I ++ + K
Sbjct: 1421 YKYCRLDGSTKLEDRRDTVSDFQQRPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTKQVTVYRLITRGTIEERIRKRALQK 1520          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: RAD54_SCHPO (DNA repair protein rhp54 OS=Schizosaccharomyces pombe GN=rhp54 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 54/130 (41.54%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDV-APIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFKGGLFKTATEHKEQI-RYFSQQDLRELLSL 385
            YK L  DGT   + R ++V+ F + +  A +FLL+S+ GG G+ L  A+R+I+ DP WNP+ D Q++ R +R GQKKD  VYR +  GT+EEKI+++Q  K  L     +  + + R+FS  +LR+L  L
Sbjct:  652 YKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQL 781          
BLAST of CF834523 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.112e-22
Identity = 50/100 (50.00%), Postives = 71/100 (71.00%), Query Frame = 2
Query:    2 YKFLLFDGTTKASDRVKIVNDFQEGDVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVVVYRLMTCGTVEEKIYRKQIFK 301
            YK+L  DG+TK  DR   V+DFQ      IFLL+++ GGLG+ LT AD VI  D  WNP+ D+Q++DRA+R+GQ + V VYR++T GT+EE+I ++ + K
Sbjct: 1463 YKYLRLDGSTKLEDRRDTVHDFQTRPEIFIFLLSTRAGGLGINLTSADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEERIRKRALQK 1562          
The following BLAST results are available for this feature:
BLAST of CF834523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 169
Match NameE-valueIdentityDescription
ERC6L_HUMAN6.227e-4753.59DNA excision repair protein ERCC-6-like OS=Homo sa... [more]
ERC6L_BOVIN6.227e-4752.75DNA excision repair protein ERCC-6-like OS=Bos tau... [more]
ERC6L_MOUSE8.992e-4652.75DNA excision repair protein ERCC-6-like OS=Mus mus... [more]
ERC6L_DANRE6.444e-4450.55DNA excision repair protein ERCC-6-like OS=Danio r... [more]
RHP26_SCHPO4.790e-3154.10DNA repair protein rhp26 OS=Schizosaccharomyces po... [more]
ERCC6_HUMAN1.067e-3050.78DNA excision repair protein ERCC-6 OS=Homo sapiens... [more]
RAD26_YEAST8.456e-2841.62DNA repair and recombination protein RAD26 OS=Sacc... [more]
INO80_COCIM2.383e-2250.00Putative DNA helicase INO80 OS=Coccidioides immiti... [more]
RAD54_SCHPO3.112e-2241.54DNA repair protein rhp54 OS=Schizosaccharomyces po... [more]
INO80_SCLS13.112e-2250.00Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05K20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834523 ID=CF834523; Name=CF834523; organism=Citrus sinensis; type=EST; length=745bp
TTACAAGTTTCTCCTTTTTGATGGTACCACAAAAGCTAGTGACAGAGTGA
AGATTGTTAATGATTTTCAAGAGGGTGACGTGGCTCCTATATTTCTTTTG
ACATCTCAAGTTGGGGGTCTAGGCCTCACACTTACTAAAGCAGACCGTGT
GATTGTGGTGGATCCTGCTTGGAATCCAAGTACTGATAATCAAAGCGTTG
ATCGTGCTTATCGAATTGGACAAAAAAAGGATGTCGTTGTGTACAGATTA
ATGACATGTGGAACAGTTGAAGAAAAGATTTATAGAAAGCAGATATTCAA
AGGCGGATTGTTTAAGACAGCCACTGAGCACAAAGAACAGATTCGGTATT
TTAGCCAGCAGGATCTTCGGGAACTTCTCAGTCTACCCAAACAGGGGTTT
GATGTTTCTCTCACCCAGCAGCAATTACATGAAGAGCATGGGGACCAGCA
CAACATGGATGAGTCCTTGGAAGCCCACATACAGTTCCTTGACACACTAG
GTATAGCAGGAGTCAGTCATCACAGTTTACTCTTCTCCAAGACAGCACGA
GTGCAAGTAGTGCAGGAAGAACAGGAAGTGACAAGGAGAAAAGGAACTGC
ATTTGTTGGTAATTTGTCATCTAGCTACCTGGTTGCACGAAACGTCGATG
GGGCTGAGTATGCGTTCAATCCTAGAGACATAAAACTGAACAAAAAATCT
TCTTCCCCAATAACTGAAGCTAAATTGAAAGAGTCTGATATCAAG
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