CF834534

Overview
NameCF834534
Unique NameCF834534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length227
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:1266..1491. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834534 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2 
Query:  131 RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 226
            R+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  388 RVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
[Close]
BLAST of CF834534 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.604e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2 
Query:  131 RIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 226
            R+HVTQEDFEMAVAKVMKK+TEKNMSLRKLWK
Sbjct:  388 RVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK 419
The following BLAST results are available for this feature:
BLAST of CF834534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PRS8B_ARATH7.604e-1193.7526S protease regulatory subunit 8 homolog B OS=Ara... [more]
PRS8A_ARATH7.604e-1193.7526S protease regulatory subunit 8 homolog A OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05L05_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834534 ID=CF834534; Name=CF834534; organism=Citrus sinensis; type=EST; length=227bp
AAAGAGAACAGGAAGGTTAAAAGGGCCCCCCTTTGCAAATGTCCCAAAAC
ACGAGTGAGTGCCGTTAAGGACTACTTGAATCTTGCTCAGAAAATAAGCA
AATACTCAGCACAGCACATGGAAATGATTACTTCCACAACTTCCGCAAGG
ACATGTTCTTCTCTGTTTCTTTCTTCATGACCTTGGCCACTGCCATTTCA
AAATCTTCCTGTGTTACATGGATCCTT
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