CF834539

Overview
NameCF834539
Unique NameCF834539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1841 contig Csv1_Contig1841:132..555. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 7.514e-59
Identity = 98/132 (74.24%), Postives = 110/132 (83.33%), Query Frame = 1
Query:   19 PFTSGRPSRPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCP 414
            P+T     +PNAGHP+LERGGF LH+LTHRSFPAP  HW+GRIWA TGC Y HGKF C TGDCG R+EC+GLGGA PATLAQ  LHHGH D S+Y VSLVD FN+P+TVTPHEGKGVCPVVGCRA+LL +CP
Sbjct:   38 PYTIWPAIQPNAGHPVLERGGFTLHSLTHRSFPAPNAHWSGRIWARTGCNYQHGKFYCATGDCGGRIECDGLGGAAPATLAQFVLHHGHADFSTYGVSLVDGFNIPLTVTPHEGKGVCPVVGCRANLLESCP 169          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.748e-23
Identity = 58/128 (45.31%), Postives = 72/128 (56.25%), Query Frame = 1
Query:   43 RPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAH-GKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            +P+AG  +L  GGF L      S   P   W+GR W   GCT+   G+  C TGDCG  L CNG GG  PATLA+ITL     +L  Y VSLVD +N+ M++ P +G G C   GC +DL   CP  L
Sbjct:   38 QPSAGQNLLAGGGFKLPANKAHSLQLPPL-WSGRFWGRHGCTFDRSGRGHCATGDCGGSLSCNGAGGEPPATLAEITL---GPELDFYDVSLVDGYNLAMSIMPVKGSGQCSYAGCVSDLNQMCPVGL 161          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.525e-22
Identity = 53/125 (42.40%), Postives = 71/125 (56.80%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            AGHP  + GGF+L      +   PA  W+GR+W   GC++ + G+ SC TGDCG  L CNG  GATPAT+ ++TL    + +  Y VSLVD FN P+++    G   C    C AD+   CP  L
Sbjct:   49 AGHPTPQSGGFHLGAGEEAALEVPAG-WSGRVWPRRGCSFDSRGRGSCATGDCGGVLRCNGAAGATPATVVEMTLGTSASAMHFYDVSLVDGFNAPVSMAAVGGGVGCGTAACGADVNVCCPSAL 172          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.374e-21
Identity = 59/140 (42.14%), Postives = 71/140 (50.71%), Query Frame = 1
Query:   10 TTAPFTSGRPSRPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            T  P + G P     G  +  +  F L T      P P   W+GR WA T C T A GKF C T DC   +L CNG  G  PATLA+ T+  G      Y VSLVD FN+PM+VTP  G G C +  C A++   CP  L
Sbjct:   35 TVWPASFGNPQLSTTGFELASQASFQLDT------PVP---WSGRFWARTRCSTDASGKFVCETADCDSGQLMCNGKTGIPPATLAEFTIAAGGGQ-DFYDVSLVDGFNLPMSVTPQGGTGTCKMGSCAANVNLVCPSEL 164          

HSP 2 Score: 24.2534 bits (51), Expect = 2.374e-21
Identity = 8/10 (80.00%), Postives = 8/10 (80.00%), Query Frame = 3
Query:    9 NNCPLHVWPA 38
            NNCP  VWPA
Sbjct:   30 NNCPYTVWPA 39          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.150e-20
Identity = 57/124 (45.97%), Postives = 70/124 (56.45%), Query Frame = 1
Query:   61 PILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQITLH-HGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            P L   GF L +   RS  AP+  W+GR W  T C T A GKF+C T DCG  ++ CNG G   PATL +IT+  +G  D   Y VSLVD FN+PM+V P  G G C    C A++   CP  L
Sbjct:   48 PQLSLTGFELASKASRSVDAPSP-WSGRFWGRTRCSTDAAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDY--YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNKVCPAPL 168          

HSP 2 Score: 23.8682 bits (50), Expect = 1.150e-20
Identity = 9/18 (50.00%), Postives = 10/18 (55.56%), Query Frame = 3
Query:    9 NNCPLHVWPAIQTQRRPP 62
            NNCP  VWP   T  + P
Sbjct:   31 NNCPNTVWPGTLTGDQKP 48          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.385e-20
Identity = 59/122 (48.36%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   61 PILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            P L  GGF L     R   APA  W+GR WA TGC + A G   CVTGDCG  L CNG GG  P TLA+ TL  G      Y VSLVD +NV + + P  G G C   GC +DL + CP  L
Sbjct:   46 PKLGDGGFELTPGASRQLTAPAG-WSGRFWARTGCNFDASGNGRCVTGDCGG-LRCNG-GGVPPVTLAEFTLV-GDGGKDFYDVSLVDGYNVKLGIRPSGGSGDCKYAGCVSDLNAACPDML 163          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.809e-20
Identity = 59/124 (47.58%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   61 PILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQITL-HHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            P L   GF L T   RS  AP+  W+GR +  T C T A GKF+C T DCG  ++ CNG G A PATL +IT+  +G  D   Y VSLVD FN+PM+V P  G G C    C AD+   CP  L
Sbjct:   48 PQLSLTGFELATGISRSVDAPSP-WSGRFFGRTRCSTDASGKFTCATADCGSGQVSCNGNGAAPPATLVEITIASNGGQDF--YDVSLVDGFNLPMSVAPQGGTGKCKASTCPADINKVCPAPL 168          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.980e-20
Identity = 55/132 (41.67%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   34 RPSRPNAGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            +P     G  +  +  F L T      P P   W GR WA TGC T A GKF C T DC   ++ CNG G   PATLA+  +  G      Y VSLVD FN+PM+VTP  G G C    C A++ + CP  L
Sbjct:   46 KPQLSTTGFELASQASFQLDT------PVP---WNGRFWARTGCSTDASGKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQ-DFYDVSLVDGFNLPMSVTPQGGTGDCKTASCPANVNAVCPSEL 167          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.412e-19
Identity = 56/124 (45.16%), Postives = 69/124 (55.65%), Query Frame = 1
Query:   61 PILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGC-TYAHGKFSCVTGDCGH-RLECNGLGGATPATLAQITLH-HGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            P L    F L +   +S  AP+  W+GR W  T C T A GKFSC T DCG  ++ CNG G   PATL +IT+  +G  D   Y VSLVD FN+PM+V P  G G C    C A++   CP  L
Sbjct:   14 PQLSLTAFELASKASQSVDAPSP-WSGRFWGRTRCSTDAAGKFSCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDY--YDVSLVDGFNLPMSVAPQGGTGECKPSSCPANVNMACPAQL 134          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.434e-17
Identity = 51/126 (40.48%), Postives = 69/126 (54.76%), Query Frame = 1
Query:   55 GHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTY-AHGKFSCVTGDCGH-RLECNGLGGATPATLAQITLH-HGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            G P L   GF L +    S    A  W+GR W  + C+  + GKF C TGDCG  ++ CNG G + PA+L ++TL  +G  D   Y VSLVD FN+P+ + P  G G C    C A++ + CP  L
Sbjct:   44 GGPQLLSTGFELASGASTSLTVQAP-WSGRFWGRSHCSIDSSGKFKCSTGDCGSGQISCNGAGASPPASLVELTLATNGGQDF--YDVSLVDGFNLPIKLAPRGGSGDCNSTSCAANINTVCPAEL 166          
The following BLAST results are available for this feature:
BLAST of CF834539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
OLP1_SOLLC7.514e-5974.24Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.748e-2345.31Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
TLPH_ORYSJ2.525e-2242.40Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP2_PRUPE2.374e-2142.14Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
TP1A_MALDO1.150e-2045.97Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
PR5_ARATH1.385e-2048.36Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_PRUPE1.809e-2047.58Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP_PRUAV8.980e-2041.67Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1B_MALDO3.412e-1945.16Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PYRPY1.434e-1740.48Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834539 ID=CF834539; Name=CF834539; organism=Citrus sinensis; type=EST; length=425bp
CCCTAGTCAACAACTGCCCCCTTCACGTCTGGCCGGCCATCCAGACCCAA
CGCCGGCCACCCAATCCTCGAACGTGGCGGTTTCTATCTCCATACCCTCA
CCCACCGCTCCTTCCCCGCTCCGGCCCAACACTGGACGGGCCGGATCTGG
GCCATAACCGGCTGCACCTACGCCCACGGCAAATTCTCCTGCGTCACGGG
CGACTGCGGCCACCGCTTGGAATGCAACGGACTCGGCGGGGCGACTCCAG
CCACCCTGGCCCAGATCACCCTCCACCACGGCCACAACGACCTCTCCTCC
TACCGCGTCTCTCTAGTCGACAGCTTCAACGTCCCCATGACTGTCACCCC
GCACGAGGGCAAGGGCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACCTGC
TATCCACGTGTCCTCAGAACCTGCA
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