CF834540

Overview
NameCF834540
Unique NameCF834540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length244
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.139e-28
Identity = 55/81 (67.90%), Postives = 62/81 (76.54%), Query Frame = -2
Query:    1 VVGCRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHDSPSFM 243
            VVGCRA+L+ +CP  LQ RS  GH  VV CKS CEAF +DE CCRNHYNSPQTC+ S +S+ FK ACPAT  YAHDSPS M
Sbjct:  157 VVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLM 237          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.513e-16
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = -2
Query:    7 GCRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHDSPS 237
            GC +DL   CP  LQVRS  G  RVVACKS C AF + + CC   + +PQ+C+ + +S++FK+ACP    YA+D P+
Sbjct:  148 GCVSDLNQMCPVGLQVRSRNGK-RVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPT 223          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.409e-14
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = -2
Query:   16 GCRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 237
            GC +DL A CP  L+V      + VVACKS CE F TD+ CCR   + P+TC  + +S +FK ACP    YA+D
Sbjct:  150 GCVSDLNAACPDMLKVMD---QNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYD 220          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.965e-13
Identity = 34/73 (46.58%), Postives = 39/73 (53.42%), Query Frame = -2
Query:   16 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 234
            C AD+   CP  L+VR   G  RV  C+S C A G D  CC   Y SP  CR + FS LFK  CP    YA+D
Sbjct:  160 CGADVNVCCPSALEVRDREG--RVAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYD 230          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.150e-11
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = -2
Query:   16 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 234
            CRA++ A CP  LQV+       V+ACKS C AF   + CC   +++ +TC A+++S +FK  CP    YA+D
Sbjct:  153 CRANVNAVCPAELQVKGSDAS--VLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYD 223          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.502e-11
Identity = 32/73 (43.84%), Postives = 42/73 (57.53%), Query Frame = -2
Query:   16 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 234
            C A++ A CP  LQ +   G   VVAC S C  FGT + CC    N+P+TC  + +SE+F  ACP    YA+D
Sbjct:  155 CPANVNAVCPSELQKKGSDGS--VVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYD 225          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.562e-11
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = -2
Query:   16 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 234
            C A++   CP  LQV++  G   V++CKS C AFG  + CC    N+P+TC  + +SE+F+  CP    YA+D
Sbjct:  156 CPANVNKVCPAPLQVKAADGS--VISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYD 226          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.708e-11
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = -2
Query:   16 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHD 234
            C A++   CP  LQV++  G   V++CKS C AFG  + CC    ++P+TC  + +SE+F+  CP    YA+D
Sbjct:  122 CPANVNMACPAQLQVKAADGS--VISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYD 192          
BLAST of CF834540 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.708e-11
Identity = 32/76 (42.11%), Postives = 41/76 (53.95%), Query Frame = -2
Query:    7 CRADLVATCPQNLQVRSPPGHDRVVACKSGCEAFGTDELCCRNHYNSPQTCRASRFSELFKLACPATMYYAHDSPS 234
            C AD+   CP  LQV+   G   V+ACKS C AF   + CC    + P+TC    +S+LFK  CP    YA+D  S
Sbjct:  156 CPADINKVCPAPLQVKGSDGS--VIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKS 229          
The following BLAST results are available for this feature:
BLAST of CF834540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
OLP1_SOLLC5.139e-2867.90Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH4.513e-1648.05Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH9.409e-1447.30Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLPH_ORYSJ7.965e-1346.58Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP1_CASSA1.150e-1141.10Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP_PRUAV1.502e-1143.84Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO2.562e-1141.10Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO5.708e-1139.73Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PRUPE5.708e-1142.11Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834540 ID=CF834540; Name=CF834540; organism=Citrus sinensis; type=EST; length=244bp
CATGAACGAAGGGCTGTCATGGGCATAATACATCGTGGCTGGACAAGCGA
GCTTGAACAACTCCGAAAATCTCGAGGCCCGGCATGTCTGCGGACTGTTG
TAATGGTTCCTACAACACAGCTCGTCCGTACCAAACGCCTCACACCCACT
CTTACATGCCACCACGCGGTCGTGACCCGGCGGTGACCTCACCTGCAGGT
TCTGAGGACACGTGGCTACCAGGTCAGCGCGACAACCCACTACC
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