CF834590

Overview
NameCF834590
Unique NameCF834590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1288 contig Csv1_Contig1288:1215..1934. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.259e-72
Identity = 130/240 (54.17%), Postives = 163/240 (67.92%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            +FA Y S R++ +FKG  WK+    TA++ PGI+  IFF +N  + G KSS AVPFGT  ++I +WFGISVPLV++GS+   KKP  EDPV+TN+IPRQ+P+Q WYMNP  SIL+GGILPFGAVFIEL FILTS+W NQ                 T AEI+IV+CYFQLC+ED+ WWWRS+LT+GSS               L ITK +S +L F Y  I S AF  LTGTIGFY+C++
Sbjct:  391 MFAGYFSTRVFTIFKGRNWKKNTIYTALSMPGIIFGIFFFVNMFLRGAKSSAAVPFGTFASIIAMWFGISVPLVFLGSYFASKKPVPEDPVRTNQIPRQVPDQIWYMNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSSSLYMFIYSVSFFRY-LGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYF 629          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 124/238 (52.10%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            A Y +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFW
Sbjct:  414 AGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFW 651          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 124/238 (52.10%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            A Y +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFW
Sbjct:  414 AGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFW 651          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 124/238 (52.10%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            A Y +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFW
Sbjct:  413 AGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFW 650          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.692e-70
Identity = 124/238 (52.10%), Postives = 159/238 (66.81%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            A Y +AR YK F G +WK     T+   PGIV A FF++N ++WG+ SS A+PFGT+ A++ LWF ISVPL ++G++ GFKK AIE PV+TN+IPRQIPEQ++Y  P+  I++GGILPFG +FI+LFFIL SIW +Q                 TC+E TI+LCYF LC+EDY W WRS+LTSG +              KL+IT   S ILYFGY +I    FF+ TGTIGF+ACFW
Sbjct:  414 AGYVAARFYKSFGGEKWKTNVLLTSFLCPGIVFADFFIMNLILWGEGSSAAIPFGTLVAILALWFCISVPLTFIGAYFGFKKNAIEHPVRTNQIPRQIPEQSFYTKPLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFW 651          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 121/239 (50.63%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            +F  +++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA +
Sbjct:  392 VFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAY 630          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 121/239 (50.63%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            +F  +++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA +
Sbjct:  391 VFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 121/239 (50.63%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            +F  +++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA +
Sbjct:  392 VFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAY 630          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 121/239 (50.63%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            +F  +++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA +
Sbjct:  391 VFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 4.923e-70
Identity = 121/239 (50.63%), Postives = 162/239 (67.78%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACF 718
            +F  +++ RLY+  KG  WK+ AF TA  +PG+V  I FVLN  IWG+ SSGAVPF TM AL+ +WFGIS+PLVY+G + GF+K   ++PV+TN+IPRQIPEQ WYMN    IL+ GILPFGA+FIELFFI ++IW NQ                 +C++I+IV+ YFQLC+EDY+WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA +
Sbjct:  391 VFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAY 629          
The following BLAST results are available for this feature:
BLAST of CF834590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1A_DICDI5.259e-7254.17Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S2_RAT1.692e-7052.10Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.692e-7052.10Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.692e-7052.10Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.692e-7052.10Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
TM9S4_RAT4.923e-7050.63Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB4.923e-7050.63Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE4.923e-7050.63Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN4.923e-7050.63Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN4.923e-7050.63Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834590 ID=CF834590; Name=CF834590; organism=Citrus sinensis; type=EST; length=721bp
TCTTTTTGCTGCTTATGCCTCTGCTCGCTTGTACAAGTTGTTTAAAGGAA
CTGAGTGGAAGAGAATTGCCTTCAGAACTGCAATCACTTTCCCAGGAATT
GTCTCAGCCATTTTCTTTGTCTTGAATGCTCTTATTTGGGGACAGAAATC
GTCCGGGGCTGTGCCATTTGGGACCATGTTTGCTCTCATCGTCTTGTGGT
TTGGAATCTCAGTACCACTAGTATATGTTGGCAGTTTTGTTGGGTTCAAG
AAGCCAGCAATTGAGGATCCGGTGAAGACAAACAAAATCCCAAGGCAAAT
CCCTGAGCAGGCTTGGTATATGAACCCAATCTTCTCAATTCTCATTGGAG
GGATACTTCCATTTGGAGCCGTTTTCATTGAACTTTTCTTTATCCTCACA
TCAATCTGGCTGAACCAGTTCTATTACATCTTTGGTTTCCTCTTCTTGGT
CTTCGTCATTCTCATTGTCACCTGTGCCGAAATAACCATTGTGCTATGCT
ACTTCCAGTTGTGCAGTGAGGACTACCAATGGTGGTGGAGGTCATATCTT
ACATCAGGCTCTTCTGCTCTGTACCTCTTCCTTTACGCAACATTCTACTT
CTTCACAAAGCTTGAAATAACCAAGCTGGTTTCTGGAATACTCTACTTTG
GTTACATGCTGATTGCTTCATATGCATTTTTTGTACTAACGGGCACCATT
GGATTTTATGCATGCTTTTGG
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