CF834601

Overview
NameCF834601
Unique NameCF834601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1078 contig Csv1_Contig1078:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 4.096e-45
Identity = 86/96 (89.58%), Postives = 90/96 (93.75%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTA AKNRH NGQGRWP KSA+F+LDLL
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLL 96          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.192e-44
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFTRFC GVGRTA AKNRH NGQGRWP KSA+F+LDLL
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQGRWPAKSAQFVLDLL 96          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.485e-42
Identity = 82/96 (85.42%), Postives = 88/96 (91.67%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF R+CGGVGRTA AK+RH NGQGRWPVKSA+FILDLL
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPVKSARFILDLL 96          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 77/96 (80.21%), Postives = 83/96 (86.46%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF R+C GVGRTA  KNR PNGQGRWP KSAKF+LDLL
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAKFVLDLL 96          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.572e-39
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF R+C GVGRTA  KNR PNGQGRWP KSA+F+LDLL
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQGRWPAKSAQFVLDLL 96          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 67/96 (69.79%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M KYS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF RFCGGVGR A AK    + QGRWPVKSA+F+L LL
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK-AFKHTQGRWPVKSAEFLLGLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.413e-29
Identity = 64/97 (65.98%), Postives = 74/97 (76.29%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKN-RHPNGQGRWPVKSAKFILDLL 712
            M +Y+ EP+NP KSCKARG DLRVHFKNTRETA AI+ + L KA RYL DV+  KQ IPF RF GGVGR A AKN + P  QGRWP KSA+F++ LL
Sbjct:    1 MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLL 97          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.168e-29
Identity = 64/96 (66.67%), Postives = 76/96 (79.17%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS+EPDNP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V+  K+ IPF RF GGVGR A AK +    QGRWP KSA+F+L LL
Sbjct:    1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR A AK+ +    GRWP KSA+F+L LL
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWN-TSVGRWPKKSAEFLLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.729e-27
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF RF GGVGR A AK+ +    GRWP KSA+F+L LL
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKHWN-TSVGRWPKKSAEFLLQLL 95          
The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL172_ARATH4.096e-4589.5860S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH1.192e-4488.5460S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE2.485e-4285.4260S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU6.768e-4080.2160S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU2.572e-3978.1360S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA2.850e-3069.7960S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_SUBDO2.413e-2965.9860S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_BOMMO9.168e-2966.6760S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_AEDAL1.729e-2761.4660S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]
RL17_AEDAE1.729e-2761.4660S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bp
TTTTGAGTTTTCAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCA
GTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAG
AGGCAGCATCCAAAATCAGCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACG
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACGATTCTGCGGTGGTGTTGGACGTACTGCTCANGCAAAGAATA
GGCATCCAAATGGACAGGGACGATGGCCTGTCAAATCAGCAAAGTTCATT
CTTGACTTGCTC
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