CF834603

Overview
NameCF834603
Unique NameCF834603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1078 contig Csv1_Contig1078:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL172_ARATH (60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.535e-35
Identity = 72/81 (88.89%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKNTHPNGQ 667
            MVKYS+EPDN TKSCKARGSDLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFT FC GVGRTA AKN H NGQ
Sbjct:    1 MVKYSQEPDNQTKSCKARGSDLRVHFKNTRETAHAIRKLPLIKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQ 81          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL171_ARATH (60S ribosomal protein L17-1 OS=Arabidopsis thaliana GN=RPL17A PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.467e-35
Identity = 71/81 (87.65%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKNTHPNGQ 667
            MVKYS+EPDN TKSCKARG+DLRVHFKNTRETAHAIRKLPL KAKRYLEDV+AHKQAIPFT FC GVGRTA AKN H NGQ
Sbjct:    1 MVKYSQEPDNITKSCKARGADLRVHFKNTRETAHAIRKLPLNKAKRYLEDVIAHKQAIPFTRFCRGVGRTAQAKNRHSNGQ 81          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 66/81 (81.48%), Postives = 71/81 (87.65%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKNTHPNGQ 667
            MVKYS+EP NPTKS KA G DLRVHFKNTRETA A+RKLPLTKAKRYLEDV+AHKQAIPF  +CGGVGRTA AK+ H NGQ
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQ 81          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL171_HORVU (60S ribosomal protein L17-1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.380e-30
Identity = 62/81 (76.54%), Postives = 67/81 (82.72%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKNTHPNGQ 667
            MVKYS +P NPTKS KA G DLRVHFKNTRETA A+RK+PL KAKRYLEDV+AHKQAIPF  +C GVGRTA  KN  PNGQ
Sbjct:    1 MVKYSTDPANPTKSAKAMGRDLRVHFKNTRETAFALRKMPLNKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQ 81          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL172_HORVU (60S ribosomal protein L17-2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.638e-30
Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKNTHPNGQ 667
            MVKYS++P NPTKS KA G DLRVHFKNTRETA A+R++PL KAKRYLEDV+AHKQAIPF  +C GVGRTA  KN  PNGQ
Sbjct:    1 MVKYSRDPSNPTKSAKACGKDLRVHFKNTRETAFALRRMPLGKAKRYLEDVLAHKQAIPFRRYCRGVGRTAQVKNRQPNGQ 81          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_PODCA (60S ribosomal protein L17 OS=Podocoryne carnea GN=RPL17 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.922e-23
Identity = 53/74 (71.62%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M KYS +P+NP KSCKARGS LRVHFKNTRETA AI+K+ + KA RYL+DV+A KQ IPF  FCGGVGR A AK
Sbjct:    1 MGKYSIDPENPIKSCKARGSYLRVHFKNTRETAQAIKKMHIRKAYRYLKDVIAKKQIIPFRRFCGGVGRKAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.320e-22
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+EPDNP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V+  K+ IPF  F GGVGR A AK
Sbjct:    1 MGRYSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 9.660e-22
Identity = 51/75 (68.00%), Postives = 57/75 (76.00%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKN 649
            M +Y+ EP+NP KSCKARG DLRVHFKNTRETA AI+ + L KA RYL DV+  KQ IPF  F GGVGR A AKN
Sbjct:    1 MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKN 75          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+++ L +A+RYL++V+A K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_AEDAL (60S ribosomal protein L17 OS=Aedes albopictus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKN 649
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF  F GGVGR A AK+
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKH 75          
The following BLAST results are available for this feature:
BLAST of CF834603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL172_ARATH1.535e-3588.8960S ribosomal protein L17-2 OS=Arabidopsis thalian... [more]
RL171_ARATH4.467e-3587.6560S ribosomal protein L17-1 OS=Arabidopsis thalian... [more]
RL17_MAIZE4.622e-3281.4860S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL171_HORVU7.380e-3076.5460S ribosomal protein L17-1 OS=Hordeum vulgare PE=... [more]
RL172_HORVU9.638e-3075.3160S ribosomal protein L17-2 OS=Hordeum vulgare PE=... [more]
RL17_PODCA3.922e-2371.6260S ribosomal protein L17 OS=Podocoryne carnea GN=... [more]
RL17_BOMMO3.320e-2268.9260S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]
RL17_SUBDO9.660e-2268.0060S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_ARGMO1.648e-2166.2260S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_AEDAL1.648e-2162.6760S ribosomal protein L17 OS=Aedes albopictus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834603 ID=CF834603; Name=CF834603; organism=Citrus sinensis; type=EST; length=667bp
TTTTGAGTTTCCCTTATAGTTCAATCGAAGGCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAAAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGGATGGGTACTGTTATTACCCGTCTATTGTACGATGGTCTCA
CTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAT
AGGCAGCATCCAAAATCATCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACT
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACCATTCTGCGGTGGTGTTGGACGTACTGCTCCGGCAAAGAATA
CGCATCCAAATGGACAG
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