CF834606

Overview
NameCF834606
Unique NameCF834606
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length808
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834606 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.003e-13
Identity = 34/76 (44.74%), Postives = 49/76 (64.47%), Query Frame = -3 
Query:  222 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTPDQLGLKDGDEIDAMYHAFGG 449
            INL +K QDG++ FF+     ++K+L+  YC+ +S    S  FL +G R    +TPD+L ++DGDEIDAM H  GG
Sbjct:   18 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93
[Close]
BLAST of CF834606 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = -3 
Query:  222 INLIIKSQDGDKRFFQFNHDVEIKRLLIKYCETKSQPFKSTPFLINGNRFDYSKTPDQLGLKDGDEIDAMYHAFGG 449
            INL +K QDG++ FF+     ++K+L+  YC+ +S    +  FL +G R    +TPD+L ++DGDEIDAM H  GG
Sbjct:   21 INLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96
The following BLAST results are available for this feature:
BLAST of CF834606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SMT3_ARATH3.003e-1344.74Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ1.141e-1243.42Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834606 ID=CF834606; Name=CF834606; organism=Citrus sinensis; type=EST; length=808bp
ACAGAAAGATGAATTACCTCAATCTTGAACGTTAACACATTTATCCTAAT
TAATAAGTTAATCCACCATTCAAATAAAACGAAACACAACAACAAACAAC
ACAATATCCATATACTAATTTTAAATTATTCTCATTGAAGGGCACCTTAA
TTTATTAACTTCAAGATGCATGGTGTGACCTTGAGATTATTGGATTATTA
TCATGCCCTGTGATCATGGCCACCTCCAAAGGCGTGGTACATTGCGTCAA
TCTCATCCCCATCCTTCAATCCAAGTTGGTCAGGGGTTTTAGAATAATCA
AATCGGTTCCCATTGATCAAGAAAGGGGTGCTCTTAAAGGGCTGTGATTT
TGTTTCGCAGTACTTAATCAAGAGCCGCTTTATTTCCACGTCATGATTGA
ACTGGAAGAATCTTTTGTCACCATCCTGGCTTTTGATAATGAGATTGATC
AGATGCTGCGGCTTCTTATTATTCTTAGAAGAAGAAGGCTTTAACATTTT
TCTTCCTCAAAAATTGAAAAATGAAAATCTCTTAAGCAAATTGCAAGAAG
AAATTAAGGGTGTTTGAGCTTTGAGCTTTTTAGGTTTAGGGTGTCGCATA
CATATACATACAAAAGCAAAGAACAAGAAATAAAGAAAGAAGAGTTTGGG
TTGGTACAAGAACTTAAATGCTAAATACTCAAAATGGTATTGCTTTTAAA
AGGGTTGCAAGAAAATAAATGGAAATGGGCTTTCTATTAACAGAGAGCTT
GAGAGCATGAACATGTGTACACTTGTAAGCTTTATGAATTCTGCAGCTAT
ATATACGG
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