CF834625

Overview
NameCF834625
Unique NameCF834625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834625_ssr54 microsatellite CF834625_ssr54:54..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:155..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK_LITCN (S-adenosylmethionine synthetase OS=Litchi chinensis GN=SAMS PE=2 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 6.868e-81
Identity = 146/164 (89.02%), Postives = 152/164 (92.68%), Query Frame = -1
Query:  163 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EILKIVKENFDFRPGMIS+NLDLKRGGNGRFLKTAAYGHFGR+DPDFTWE+VKPLKW+K+QA
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILKIVKENFDFRPGMISVNLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWDKVQA 393          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_VITVI (S-adenosylmethionine synthetase 2 OS=Vitis vinifera GN=METK2 PE=3 SV=1)

HSP 1 Score: 300.056 bits (767), Expect = 6.868e-81
Identity = 147/164 (89.63%), Postives = 151/164 (92.07%), Query Frame = -1
Query:  163 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE+VKPLKWEK QA
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKTQA 393          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_SOLTU (S-adenosylmethionine synthetase 1 OS=Solanum tuberosum GN=METK1 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.530e-80
Identity = 147/163 (90.18%), Postives = 150/163 (92.02%), Query Frame = -1
Query:  166 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQ 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKENFDFRPGM+SINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE+VKPLKWEK Q
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMSINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK5_VITVI (S-adenosylmethionine synthetase 5 OS=Vitis vinifera GN=METK5 PE=3 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.610e-80
Identity = 146/161 (90.68%), Postives = 149/161 (92.55%), Query Frame = -1
Query:  172 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMI+INLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE+VKPLKWEK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_ELAUM (S-adenosylmethionine synthetase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.295e-79
Identity = 146/164 (89.02%), Postives = 150/164 (91.46%), Query Frame = -1
Query:  163 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVP+PLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMI+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWEIVKPLKWEK Q+
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPDPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMITINLDLKRGGNDRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK_MEDTR (S-adenosylmethionine synthetase OS=Medicago truncatula GN=METK PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.209e-79
Identity = 144/164 (87.80%), Postives = 150/164 (91.46%), Query Frame = -1
Query:  163 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAY+VRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL+IVKENFDFRPGMI+INLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEK QA
Sbjct:  231 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKENFDFRPGMITINLDLKRGGNSRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 394          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_CATRO (S-adenosylmethionine synthetase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.209e-79
Identity = 144/161 (89.44%), Postives = 149/161 (92.55%), Query Frame = -1
Query:  172 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPDKEILKIVKENFDFRPGMI+INLDLKRGG+GRFLKTAAYGHFGRDDPDFTWE+VKPLKWEK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGSGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEK 390          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_SOLLC (S-adenosylmethionine synthetase 1 OS=Solanum lycopersicum GN=SAM1 PE=2 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 2.885e-79
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = -1
Query:  166 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQ 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKENFDFRPGM+SINLDLKRGGN RFLKTAAYGHFGRDDPDFTWE+VKPLKWEK Q
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKENFDFRPGMMSINLDLKRGGNRRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ 392          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_PETCR (S-adenosylmethionine synthetase 1 (Fragment) OS=Petroselinum crispum GN=SMS-1 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 3.768e-79
Identity = 144/161 (89.44%), Postives = 148/161 (91.93%), Query Frame = -1
Query:  172 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVD+YGTGKIPD+EILKIVKE FDFRPGMISINLDLKRGGNGRFLKTAAYGHFGR+DPDFTWE+VKPLKWEK
Sbjct:   73 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILKIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 233          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_ELAUM (S-adenosylmethionine synthetase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.922e-79
Identity = 144/164 (87.80%), Postives = 149/164 (90.85%), Query Frame = -1
Query:  163 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEKLQA 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVA+GLARRC+VQVSYAIGVPEPLSVFVDSYGTG+IPDKEIL IVKENFDFRPGMI+INLDLKRGGNGRFLKTA YGHFGRDDPDFTWEIVKPLKWEK Q+
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCLVQVSYAIGVPEPLSVFVDSYGTGQIPDKEILNIVKENFDFRPGMITINLDLKRGGNGRFLKTAGYGHFGRDDPDFTWEIVKPLKWEKPQS 393          
The following BLAST results are available for this feature:
BLAST of CF834625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LITCN6.868e-8189.02S-adenosylmethionine synthetase OS=Litchi chinensi... [more]
METK2_VITVI6.868e-8189.63S-adenosylmethionine synthetase 2 OS=Vitis vinifer... [more]
METK1_SOLTU1.530e-8090.18S-adenosylmethionine synthetase 1 OS=Solanum tuber... [more]
METK5_VITVI2.610e-8090.68S-adenosylmethionine synthetase 5 OS=Vitis vinifer... [more]
METK2_ELAUM1.295e-7989.02S-adenosylmethionine synthetase 2 OS=Elaeagnus umb... [more]
METK_MEDTR2.209e-7987.80S-adenosylmethionine synthetase OS=Medicago trunca... [more]
METK1_CATRO2.209e-7989.44S-adenosylmethionine synthetase 1 OS=Catharanthus ... [more]
METK1_SOLLC2.885e-7988.96S-adenosylmethionine synthetase 1 OS=Solanum lycop... [more]
METK1_PETCR3.768e-7989.44S-adenosylmethionine synthetase 1 (Fragment) OS=Pe... [more]
METK1_ELAUM4.922e-7987.80S-adenosylmethionine synthetase 1 OS=Elaeagnus umb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834625 ID=CF834625; Name=CF834625; organism=Citrus sinensis; type=EST; length=654bp
CCTTGGATTGAGAATCCATTAAACATATTTATTAAAAAAAAAAAGGAAAA
GAAAAAGAAAGAAAGAAAGAAAACATTCATGTAACTGAAACAGAAGTAAA
AAAGAAAAGTAGACATATATAAGCACCAATGAGAGGCCAGCAGCTCATCC
TTGATTAGTTTAAGCTTGAAGTTTCTCCCACTTGAGTGGCTTAACAATCT
CCCAAGTGAAATCAGGATCATCTCTGCCAAAGTGCCCATAAGCGGCAGTC
TTCAAGAACCTGCCGTTGCCACCCCTCTTGAGATCAAGATTAATAGAAAT
CATCCCAGGCCTAAAATCAAAATTCTCCTTCACAATCTTCAAAATTTCCT
TGTCAGGGATCTTCCCAGTCCCATAACTATCAACAAAAACTGACAAAGGC
TCGGGCACACCAATAGCGTAAGAAACCTGAACAATGCATCTCCTGGCAAG
CCCGCTTGCCACAATACTCTTAGCAGCTTGCCTTACAATGTAAGCACCGC
TTCTATCAACCTTGGTAGGATCTTTCCCTGAGAAAGCCCCACCACCGTGT
GCCCCCCAGCCACCATAAGTATCAATAATAATCTTCCGGCCGGTGAGCCC
AGCATCACCGTGAGGGCCACCAATCACAAAACGGCCAGATGGGTTAAGAT
GGAA
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