CF834629

Overview
NameCF834629
Unique NameCF834629
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13711 contig Csv1_Contig13711:1038..1801. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834629 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.384e-57
Identity = 111/157 (70.70%), Postives = 132/157 (84.08%), Query Frame = -2
Query:  297 DVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNG-SPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 764
            DVR+EYLVFCP+  RL+FPEEN+ S +KISKLEDPAQ+SRLGL PRRADLDMNQHVNNV YIGW+LES+P++V+ THEL+TITLDYRRECQ DDVVDSLTS E  ED   V+K+ GTNG + A T  ++D+ +FLH LR+SG G EINRGR+ WRKK
Sbjct:  210 DVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVDEDT-AVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRGRTEWRKK 365          
BLAST of CF834629 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.552e-23
Identity = 64/139 (46.04%), Postives = 83/139 (59.71%), Query Frame = -2
Query:  297 PEENSSSSRKISKLEDPAQYS-RLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 710
            P       RK+ KL++    S R GL PR  DLD+NQHVNNV YIGW+LES P +V++T EL ++TL+YRREC ++ V++SLT+ +P           G  GS           QF HLLRL  DG EI +GR+ WR K
Sbjct:  279 PPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDP---------SGGGYGS-----------QFQHLLRLE-DGGEIVKGRTEWRPK 396          
BLAST of CF834629 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.906e-22
Identity = 62/138 (44.93%), Postives = 85/138 (61.59%), Query Frame = -2
Query:  288 SSSSRKISKLEDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKKPAR 698
            +  S+K+ KL+D  A++   GL P+ +DLD+NQHVNNV YIGW+LES P  ++++HEL  +TL+YRREC +D V+ SLT+         V+               E N Q  HLLRL  DG+EI RGR+ WR K A+
Sbjct:  279 AEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNV-------------GEFNCQ--HLLRLD-DGAEIVRGRTRWRPKHAK 400          
BLAST of CF834629 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.670e-18
Identity = 51/131 (38.93%), Postives = 75/131 (57.25%), Query Frame = -2
Query:  297 RKISKLEDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 686
            +K+ KL D  A Y + GL PR  DLD+NQHVNN+ Y+ W+ E++P  + ++H + + TL+YRREC +D V+ SLT+            + G +    +  D        HLL+L G GSE+ R R+ WR K
Sbjct:  256 KKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTT------------VSGGSSEAGLVCD--------HLLQLEG-GSEVLRARTEWRPK 365          
BLAST of CF834629 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.346e-18
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  297 RKISKLEDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRGRSVWRKK 686
            +K  KL D  A Y + GL PR  DLD+NQHVNN+ Y+ W+LE++P  + ++H + + T++YRREC  D V+ SLT+                       G  E      HLL+L G GSE+ R ++ WR K
Sbjct:  256 KKPQKLNDSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS--------------------GGSSEAGLVCEHLLQLEG-GSEVLRAKTEWRPK 365          
The following BLAST results are available for this feature:
BLAST of CF834629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATA_CORSA2.384e-5770.70Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
FATB_CUPHO6.552e-2346.04Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_GOSHI1.906e-2244.93Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA1.670e-1838.93Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
FATB_CINCA6.346e-1838.17Myristoyl-acyl carrier protein thioesterase, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834629 ID=CF834629; Name=CF834629; organism=Citrus sinensis; type=EST; length=765bp
CAAAGCTCTAAGATCATGATAATCACGCATAAAAAAGCAAACAACAAAGA
TACAACAACTGATTCTGGGAGTTTGAAGTGACCTACGTATGACCAGAATC
AATTACATTCCCTCTTGCTCAATCTATCAATCATCAATCAATAGCTCTTA
AGTTACTTGTCAACACAAACTCTATCCTCACAGCACATAAATTTGGAGCA
AAGTCTATAGAGGAAAAGGAAACTAGAGAGAAGAAAACATTTCTGGAACC
CAGTGAAATAAGAGAGCAAAACTTAATTATTTCCTTATCTGGCAGGTTTC
TTTCTCCACACTGAACGGCCCCGATTTATCTCCGAGCCATCACCTGATAG
TCTCAGCAAGTGTAAAAATTGATGATTGTCCTCTTTGTCTCCAGTTATGG
CAGGTGAGCCGTTTGTTCCCTGAAGTTTTGAAACTGGTTCTGCATCCTCG
AATGGTTCTGCACTTGTTAGGGAATCAACTACATCGTCCTGTTGGCATTC
TCGTCTGTAATCTAAGGTGATAGTCTGGAGTTCGTGGGTGTCGATGACAT
CTTGAGGCATGCTCTCAAGTAACCAACCAATGTAGGTGACATTATTAACA
TGCTGGTTCATGTCCAGATCAGCTCTCCTGGGAATAAGCCCTAGCCGGGA
ATACTGAGCAGGATCTTCAAGTTTTGAAATTTTCCTTGAGCTGCTACTAT
TCTCCTCTGGAAAAGCTAACCTGAGTTCTCGAGGACAAAAGACTAAATAC
TCTTCTCGGACATCA
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