CF834630

Overview
NameCF834630
Unique NameCF834630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13711 contig Csv1_Contig13711:832..1487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834630 vs. ExPASy Swiss-Prot
Match: FATA_CORSA (Oleoyl-acyl carrier protein thioesterase, chloroplastic (Fragment) OS=Coriandrum sativum GN=FATA PE=2 SV=1)

HSP 1 Score: 346.665 bits (888), Expect = 6.398e-95
Identity = 170/219 (77.63%), Postives = 193/219 (88.13%), Query Frame = 1
Query:    1 TVRMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNG-SPAITGDKEDNHQFLHLLRLSGDGSEINRG 654
            T RMHIEIY+YPAWSDVVEIETWCQSEGRIGTRRDWI+KD+AT EVIGRATSKWVMMNQDTRRLQKVSDDVR+EYLVFCP+  RL+FPEEN+ S +KISKLEDPAQ+SRLGL PRRADLDMNQHVNNV YIGW+LES+P++V+ THEL+TITLDYRRECQ DDVVDSLTS E  ED   V+K+ GTNG + A T  ++D+ +FLH LR+SG G EINRG
Sbjct:  141 TARMHIEIYRYPAWSDVVEIETWCQSEGRIGTRRDWIIKDFATDEVIGRATSKWVMMNQDTRRLQKVSDDVRDEYLVFCPKTPRLSFPEENNKSLKKISKLEDPAQHSRLGLSPRRADLDMNQHVNNVAYIGWVLESIPKEVLYTHELETITLDYRRECQHDDVVDSLTSPEVDEDT-AVTKIIGTNGHAAAATEARDDSLKFLHFLRVSGQGLEINRG 358          
BLAST of CF834630 vs. ExPASy Swiss-Prot
Match: FATB_CUPHO (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cuphea hookeriana GN=FATB1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.332e-43
Identity = 98/217 (45.16%), Postives = 128/217 (58.99%), Query Frame = 1
Query:    7 RMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKL-EDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRG 654
            +M + + +YP W D VE+ TW    G+ G RRDW++ D  TGE++ RA+S WVMMNQ TRRL K+ D+VR E          +  P       RK+ KL E  A   R GL PR  DLD+NQHVNNV YIGW+LES P +V++T EL ++TL+YRREC ++ V++SLT+ +P           G  GS           QF HLLRL  DG EI +G
Sbjct:  199 KMQVMVNRYPTWGDTVEVNTWVAKSGKNGMRRDWLISDCNTGEILTRASSVWVMMNQKTRRLSKIPDEVRNEI-----EPHFVDSPPVIEDDDRKLPKLDEKTADSIRKGLTPRWNDLDVNQHVNNVKYIGWILESTPPEVLETQELCSLTLEYRRECGRESVLESLTAMDP---------SGGGYGS-----------QFQHLLRLE-DGGEIVKG 389          
BLAST of CF834630 vs. ExPASy Swiss-Prot
Match: FATB_GOSHI (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Gossypium hirsutum GN=FATB1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.072e-41
Identity = 94/217 (43.32%), Postives = 133/217 (61.29%), Query Frame = 1
Query:    7 RMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEENSSSSRKISKLED-PAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINRG 654
            RM + + +YP W DVV+++TW  + G+ G RRDW++ +  TGE++ RATS WVMMN+ TRRL K+ ++VR E   F      +      +  S+K+ KL+D  A++   GL P+ +DLD+NQHVNNV YIGW+LES P  ++++HEL  +TL+YRREC +D V+ SLT+         V+               E N Q  HLLRL  DG+EI RG
Sbjct:  195 RMQVVVDRYPTWGDVVQVDTWVSASGKNGMRRDWLVSNSETGEILTRATSVWVMMNKLTRRLSKIPEEVRGEIEPFFMNSDPVL-----AEDSQKLVKLDDSTAEHVCKGLTPKWSDLDVNQHVNNVKYIGWILESAPLPILESHELSALTLEYRRECGRDSVLQSLTTVSDSNTENAVNV-------------GEFNCQ--HLLRLD-DGAEIVRG 390          
BLAST of CF834630 vs. ExPASy Swiss-Prot
Match: FATB_CINCA (Myristoyl-acyl carrier protein thioesterase, chloroplastic OS=Cinnamomum camphora GN=FATB1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.440e-35
Identity = 81/216 (37.50%), Postives = 120/216 (55.56%), Query Frame = 1
Query:    7 RMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPREL-RLAFPEENSSSSRKISKLEDPAQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINR 651
            R H+ + +YPAW D VE+E W  + G  G R D++++D  TGE++ R TS  VMMN  TRRL K+ ++VR E     P  +  +A  +E     +K++  +  A Y + GL PR  DLD+NQHVNN+ Y+ W+LE++P  + ++H + + T++YRREC  D V+ SLT+                       G  E      HLL+L G GSE+ R
Sbjct:  168 RTHVAVERYPAWGDTVEVECWVGASGNNGRRHDFLVRDCKTGEILTRCTSLSVMMNTRTRRLSKIPEEVRGE---IGPAFIDNVAVKDEEIKKPQKLN--DSTADYIQGGLTPRWNDLDINQHVNNIKYVDWILETVPDSIFESHHISSFTIEYRRECTMDSVLQSLTTVS--------------------GGSSEAGLVCEHLLQLEG-GSEVLR 357          
BLAST of CF834630 vs. ExPASy Swiss-Prot
Match: FATB_UMBCA (Lauroyl-acyl carrier protein thioesterase, chloroplastic OS=Umbellularia californica GN=FATB1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.827e-34
Identity = 82/219 (37.44%), Postives = 121/219 (55.25%), Query Frame = 1
Query:    7 RMHIEIYKYPAWSDVVEIETWCQSEGRIGTRRDWILKDYATGEVIGRATSKWVMMNQDTRRLQKVSDDVREEYLVFCPRELRLAFPEE---NSSSSRKISKLEDP-AQYSRLGLIPRRADLDMNQHVNNVTYIGWLLESMPQDVIDTHELQTITLDYRRECQQDDVVDSLTSAEPFEDAEPVSKLQGTNGSPAITGDKEDNHQFLHLLRLSGDGSEINR 651
            R H+ + +YP W D VE+E W  + G  G RRD++++D  TGE++ R TS  V+MN  TRRL  + D+VR E        +  AF +         +K+ KL D  A Y + GL PR  DLD+NQHVNN+ Y+ W+ E++P  + ++H + + TL+YRREC +D V+ SLT+            + G +    +  D        HLL+L G GSE+ R
Sbjct:  168 RTHVAVERYPTWGDTVEVECWIGASGNNGMRRDFLVRDCKTGEILTRCTSLSVLMNTRTRRLSTIPDEVRGE--------IGPAFIDNVAVKDDEIKKLQKLNDSTADYIQGGLTPRWNDLDVNQHVNNLKYVAWVFETVPDSIFESHHISSFTLEYRRECTRDSVLRSLTT------------VSGGSSEAGLVCD--------HLLQLEG-GSEVLR 357          
The following BLAST results are available for this feature:
BLAST of CF834630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FATA_CORSA6.398e-9577.63Oleoyl-acyl carrier protein thioesterase, chloropl... [more]
FATB_CUPHO3.332e-4345.16Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_GOSHI1.072e-4143.32Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_CINCA7.440e-3537.50Myristoyl-acyl carrier protein thioesterase, chlor... [more]
FATB_UMBCA2.827e-3437.44Lauroyl-acyl carrier protein thioesterase, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834630 ID=CF834630; Name=CF834630; organism=Citrus sinensis; type=EST; length=656bp
ACCGTTCGTATGCACATTGAAATATATAAATACCCTGCTTGGAGTGATGT
GGTTGAAATTGAGACATGGTGCCAAAGTGAAGGAAGAATTGGAACTAGAC
GTGATTGGATTCTGAAGGACTATGCCACTGGTGAAGTTATTGGAAGAGCA
ACGAGCAAGTGGGTGATGATGAACCAAGACACTAGGCGGCTTCAGAAAGT
TAGTGATGATGTCCGAGAAGAGTATTTAGTCTTTTGTCCTCGAGAACTCA
GGTTAGCTTTTCCAGAGGAGAATAGTAGCAGCTCAAGGAAAATTTCAAAA
CTTGAAGATCCTGCTCAGTATTCCCGGCTAGGGCTTATTCCCAGGAGAGC
TGATCTGGACATGAACCAGCATGTTAATAATGTCACCTACATTGGTTGGT
TACTTGAGAGCATGCCTCAAGATGTCATCGACACCCACGAACTCCAGACT
ATCACCTTAGATTACAGACGAGAATGCCAACAGGACGATGTAGTTGATTC
CCTAACAAGTGCAGAACCATTCGAGGATGCAGAACCAGTTTCAAAACTTC
AGGGAACAAACGGCTCACCTGCCATAACTGGAGACAAAGAGGACAATCAT
CAATTTTTACACTTGCTGAGACTATCAGGTGATGGCTCGGAGATAAATCG
GGGCCG
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