CF834631

Overview
NameCF834631
Unique NameCF834631
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 276.174 bits (705), Expect = 6.173e-76
Identity = 134/172 (77.91%), Postives = 155/172 (90.12%), Query Frame = -3
Query:  205 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 714
            +L   YLHDYAGI TSVGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF NADL+ASLNLNNKGD+L ASYYH V+PL  TAVGAEV HSFST +N ITVGTQH LDPLT++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALALKP
Sbjct:  105 KLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 276          

HSP 2 Score: 30.0314 bits (66), Expect = 6.173e-76
Identity = 12/15 (80.00%), Postives = 15/15 (100.00%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SF+VPDQRSGK+E+Q
Sbjct:   95 SFRVPDQRSGKLEVQ 109          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 258.07 bits (658), Expect = 5.626e-71
Identity = 130/172 (75.58%), Postives = 149/172 (86.63%), Query Frame = -3
Query:  205 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 714
            ++   YLH+YAGISTS+GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALALKP
Sbjct:  105 KVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 276          

HSP 2 Score: 31.5722 bits (70), Expect = 5.626e-71
Identity = 14/15 (93.33%), Postives = 14/15 (93.33%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SFKVPDQ SGKVELQ
Sbjct:   95 SFKVPDQNSGKVELQ 109          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 259.225 bits (661), Expect = 9.569e-71
Identity = 125/172 (72.67%), Postives = 154/172 (89.53%), Query Frame = -3
Query:  205 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLT--AVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 714
            ++   YLH+YAGI+TS+GLTA+P+VNFS V G N ++LGTDLSFD+ +GNFTKCNAGLSF+++DLIASL LN+KGD+++ASYYH V P+T  AVGAE+ HSFS+ +NT+T+GTQH+LDPLTT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+ALKP
Sbjct:  105 KVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 276          

HSP 2 Score: 29.6462 bits (65), Expect = 9.569e-71
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SF VPDQ+SGKVELQ
Sbjct:   95 SFVVPDQKSGKVELQ 109          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 237.654 bits (605), Expect = 2.738e-64
Identity = 119/172 (69.19%), Postives = 138/172 (80.23%), Query Frame = -3
Query:  205 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 714
            ++   YLH+YAGIS+SVGL ANPIVNFS+VIGTN L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD L+ASYYH +NPL  TAVG ++ H FST +NT T+GTQH LDPLTT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LALKP
Sbjct:  105 KVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 276          

HSP 2 Score: 29.6462 bits (65), Expect = 2.738e-64
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SFKVP+Q SGKVELQ
Sbjct:   95 SFKVPEQTSGKVELQ 109          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 3.570e-64
Identity = 117/165 (70.91%), Postives = 139/165 (84.24%), Query Frame = -3
Query:  205 YLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 699
            Y HDYAGISTSVG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+ L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALALKP
Sbjct:  110 YFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 274          

HSP 2 Score: 24.6386 bits (52), Expect = 3.570e-64
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = -2
Query:  695 KVPDQRSGKVELQLF 739
            K+PD +SGK E+Q F
Sbjct:   97 KLPDHKSGKAEVQYF 111          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 237.269 bits (604), Expect = 4.655e-64
Identity = 115/166 (69.28%), Postives = 140/166 (84.34%), Query Frame = -3
Query:  205 YLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 699
            Y HDYAG+S S+GLTA+P+VN S+V GT  L++G D+S D+ +GN TK NAGLSF+N DLIASLNLNNKGDSL ASYYH VN   TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+ALKP
Sbjct:  109 YSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 274          

HSP 2 Score: 29.261 bits (64), Expect = 4.655e-64
Identity = 13/15 (86.67%), Postives = 13/15 (86.67%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SF VPDQRSGK ELQ
Sbjct:   94 SFAVPDQRSGKFELQ 108          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.598e-61
Identity = 113/171 (66.08%), Postives = 137/171 (80.12%), Query Frame = -3
Query:  205 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFVNPL-TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALKP 714
            ++   YLHDYAGI+ S+GLTANP+VN S   GT+ L++G D+S D+ + NF K NA LS+ N DLIASLNLNNKGDSL ASYYH V    TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+ALKP
Sbjct:  105 KVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275          

HSP 2 Score: 30.0314 bits (66), Expect = 1.598e-61
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = -2
Query:  701 SFKVPDQRSGKVELQ 745
            SF VPDQ+SGKVELQ
Sbjct:   95 SFAVPDQKSGKVELQ 109          
BLAST of CF834631 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 5.815e-53
Identity = 103/171 (60.23%), Postives = 129/171 (75.44%), Query Frame = -3
Query:  208 RLNSSYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNNADLIASLNLNNKGDSLAASYYHFV--NPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALALK 714
            +L   YLH+YAG++ SVGL +NP+VN S   G+  LS+G D+SFD+ + +FTK NA LS  + DLIASL+LNN GD+L ASYYH V  +  TAVGAE+ HS S  ++T+  G+QH LDP TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L LK
Sbjct:  106 KLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276          
The following BLAST results are available for this feature:
BLAST of CF834631 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
VDAC1_SOLTU6.173e-7677.91Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC1_ARATH5.626e-7175.58Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_SOLTU9.569e-7172.67Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA2.738e-6469.19Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC2_ARATH3.570e-6470.91Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ4.655e-6469.28Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT1.598e-6166.08Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE5.815e-5360.23Outer plastidial membrane protein porin OS=Zea may... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834631 ID=CF834631; Name=CF834631; organism=Citrus sinensis; type=EST; length=746bp
TTTTTTTTTTTTTTTTGGGATTAAACCTCAGTCAAAAGGTTAATTGCGTT
TTGTAAAAGCCCTCAAAAGTTATGACACAGGTTTATGCTCCTCCAATTTT
ATTTTACAATTCAAAACCACCGAGAAGAGATAAAACAAAACACATAATCA
GTTTTGAACAGACAGCTAAACTATGCCTACCAACACCTACCAAGCTCTCA
ACTATGGCTTTAGAGCCAATGCCAGTCCAAATTTGGCACTCTTCTCAATG
GCCTTGGTGTCCACCTCACCAGAAATGGTGAACAACGACTTTGGACGCCA
CTCATGCTGGATGAGAGCACTAGCAATGCCAGCATTGTTCACTCGCGCCT
TCAATGTGGTCAGTGGATCTAATATGTGCTGGGTCCCAACAGTGATGGTA
TTGTCAGTGGTTGAGAAGCTATGGATTACTTCTGCACCAACAGCTGTCAA
GGGATTAACAAAGTGGTAGTAGGATGCAGCCAGGGAATCACCTTTGTTGT
TCAAATTCAATGAAGCAATAAGGTCGGCATTGTTGAAGCTCAGACCAGCA
TTGCATTTAGTGAAGTTCCCAGATTTGGAGTCAAATGACAGATCAGTACC
AAGAGAGAGAACATTAGTACCAATCACAGCCGAGAAGTTAACAATAGGAT
TCGCTGTTAAGCCGACACTTGTGCTTATCCCCGCATAATCATGCAAATAA
CTGGAGTTCAACCTTGCCAGACCTTTGATCTGGAACTTTGAAGCTT
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