CF834632

Overview
NameCF834632
Unique NameCF834632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2995 contig Csv1_Contig2995:175..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC1_SOLTU (Mitochondrial outer membrane protein porin of 34 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 385.185 bits (988), Expect = 1.845e-106
Identity = 189/236 (80.08%), Postives = 217/236 (91.95%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GV   SSG+KKG+LFLADVNTQLKNKN+TTD+KVDT SNLFTTITVDE APGLKTILSF+VPDQRSGK+E+QYLHDYAGI TSVGLTANPIVNFS V+GTN+++LGTD+SFD+K+G+FTKCNAGLSF +ADL+ASLNLNNKGD+L ASYYH V+PL  TAVGAEV HSFST +N ITVGTQH LDPLT++KAR+NN G ASAL+QHEWRPKSLFT+SGEVDTK+++K AKFGLALA
Sbjct:   38 GVVITSSGSKKGDLFLADVNTQLKNKNVTTDIKVDTNSNLFTTITVDEAAPGLKTILSFRVPDQRSGKLEVQYLHDYAGICTSVGLTANPIVNFSGVVGTNIIALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVGAEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALA 273          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC2_SOLTU (Mitochondrial outer membrane protein porin of 36 kDa OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 368.622 bits (945), Expect = 1.787e-101
Identity = 182/236 (77.12%), Postives = 214/236 (90.68%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GVA  +SG KKGELFLADV+TQLKNKNITTD+KVDT SN++TTITVDEPAPGLKTI SF VPDQ+SGKVELQYLH+YAGI+TS+GLTA+P+VNFS V G N ++LGTDLSFD+ +GNFTKCNAGLSF+ +DLIASL LN+KGD+++ASYYH V P+  TAVGAE+ HSFS+ +NT+T+GTQH+LDPLTT+KARVN+ G ASALIQHEWRPKSLFTISGEVDT+AIEKSAK GLA+A
Sbjct:   38 GVAITASGLKKGELFLADVSTQLKNKNITTDVKVDTNSNVYTTITVDEPAPGLKTIFSFVVPDQKSGKVELQYLHEYAGINTSIGLTASPLVNFSGVAGNNTVALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVGAELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVA 273          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC_PEA (Outer plastidial membrane protein porin OS=Pisum sativum GN=POR1 PE=1 SV=2)

HSP 1 Score: 350.132 bits (897), Expect = 6.578e-96
Identity = 178/236 (75.42%), Postives = 199/236 (84.32%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GVA  SSGTKKGELFL DVNTQLKNKNITTD+KVDT SNLFTTITV+EPAPG+K ILSFKVP+Q SGKVELQYLH+YAGIS+SVGL ANPIVNFS+VIGTN L+ G D+SFD+K G  TK NA ++F   DLI SL LN KGD L+ASYYH +NPL  TAVG ++ H FST +NT T+GTQH LDPLTT+K RV N+G ASALIQHEWRPKSL TIS EVDTKAIEKSAK GL+LA
Sbjct:   38 GVAITSSGTKKGELFLGDVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGVKAILSFKVPEQTSGKVELQYLHEYAGISSSVGLKANPIVNFSSVIGTNALAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVGVDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLA 273          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC1_ARATH (Mitochondrial outer membrane protein porin 1 OS=Arabidopsis thaliana GN=At3g01280 PE=1 SV=3)

HSP 1 Score: 340.887 bits (873), Expect = 3.991e-93
Identity = 176/236 (74.58%), Postives = 198/236 (83.90%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPL--TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GVA  S+GTKKG+L L DV  Q + KNITTDLKV T S    T TVDE APGL++I SFKVPDQ SGKVELQYLH+YAGISTS+GLT NP VNFS VIG+NVL++GTD+SFD+KSGNFTK NAGLSF   DLIASL +N+KGD L ASYYH VNPL  TAVGAEV H  S+ D+TITVGTQH LDPLT++KARVN+AGIASALIQHEW+PKS FTISGEVDTK+I+KSAK GLALA
Sbjct:   38 GVAITSTGTKKGDLLLGDVAFQSRRKNITTDLKVCTDSTFLITATVDEAAPGLRSIFSFKVPDQNSGKVELQYLHEYAGISTSMGLTQNPTVNFSGVIGSNVLAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVGAEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALA 273          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC2_ARATH (Mitochondrial outer membrane protein porin 2 OS=Arabidopsis thaliana GN=HSR2 PE=1 SV=3)

HSP 1 Score: 323.939 bits (829), Expect = 5.049e-88
Identity = 158/234 (67.52%), Postives = 190/234 (81.20%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GVA  ++GT KG LFL DV TQ+KN N T D+KV T S+L TT+T DEPAPGLK I+  K+PD +SGK E+QY HDYAGISTSVG TA PIVNFS V+GTN LSLGTD++++++SGNF   NAG +F   DL ASL LN+KG+ L ASYY  V+P T VGAE+ H+F+T +N ITVGTQH LDPLTT+KARVNNAG+A+ALIQHEWRPKS FT+SGEVD+KAI+KSAK G+ALA
Sbjct:   38 GVAITTTGTNKGSLFLGDVATQVKNNNFTADVKVSTDSSLLTTLTFDEPAPGLKVIVQAKLPDHKSGKAEVQYFHDYAGISTSVGFTATPIVNFSGVVGTNGLSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAEISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALA 271          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC1_ORYSJ (Mitochondrial outer membrane protein porin OS=Oryza sativa subsp. japonica GN=VDAC1 PE=1 SV=3)

HSP 1 Score: 316.235 bits (809), Expect = 1.053e-85
Identity = 154/235 (65.53%), Postives = 193/235 (82.13%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEPAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVN-PLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            GVA  ++ TKK +L   ++ +Q+KNKNIT D+K ++ SN+ TT+TVDE  PGLK+ILSF VPDQRSGK ELQY HDYAG+S S+GLTA+P+VN S+V GT  L++G D+S D+ +GN TK NAGLSF++ DLIASLNLNNKGDSL ASYYH VN   TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR NN+G ASAL+QHEWRPKS++TIS EVDTKAI+KS+K G+A+A
Sbjct:   37 GVAITATSTKKADLIFGEIQSQIKNKNITVDVKANSDSNVVTTVTVDELTPGLKSILSFAVPDQRSGKFELQYSHDYAGVSASIGLTASPVVNLSSVFGTKALAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGAELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVA 271          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC1_WHEAT (Mitochondrial outer membrane porin OS=Triticum aestivum GN=VDAC1 PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 4.140e-82
Identity = 153/236 (64.83%), Postives = 190/236 (80.51%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPL-TAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLALA 703
            G A  ++ TKK +L + ++ +Q+KNKNIT D+K ++ASN+ TTIT D+  APGLKTILSF VPDQ+SGKVELQYLHDYAGI+ S+GLTANP+VN S   GT+ L++G D+S D+ + NF K NA LS+ + DLIASLNLNNKGDSL ASYYH V    TAVGAE+ HSFS+ +N++T GTQH LDPLT +KAR+NN+G ASALIQHE+ PKSL TIS EVDTKAIEKS+K G+A+A
Sbjct:   37 GPAITATSTKKADLTVGEIQSQIKNKNITVDVKANSASNVITTITADDLAAPGLKTILSFAVPDQKSGKVELQYLHDYAGINASIGLTANPVVNLSGAFGTSALAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGAELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIA 272          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC_MAIZE (Outer plastidial membrane protein porin OS=Zea mays GN=POR1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 3.177e-74
Identity = 139/236 (58.90%), Postives = 179/236 (75.85%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDE-PAPGLKTILSFKVPDQRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFV--NPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLAL 700
            GVA  ++GT+K E    +++TQ+KNK +T D+K ++ S+L TTITVDE   PGLK+I++  VPDQRSGK+E QYLH+YAG++ SVGL +NP+VN S   G+  LS+G D+SFD+ + +FTK NA LS    DLIASL+LNN GD+L ASYYH V  +  TAVGAE+ HS S  ++T+  G+QH LDP TT+K R NN G+ASAL+QHEWRPKS  TISG+VDTKAIEKS K GL+L
Sbjct:   38 GVAITAAGTRKNESIFGELHTQIKNKKLTVDVKANSESDLLTTITVDEFGTPGLKSIINLVVPDQRSGKLEFQYLHEYAGVNASVGLNSNPMVNLSGAFGSKALSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVGAELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSL 273          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC_DROME (Voltage-dependent anion-selective channel OS=Drosophila melanogaster GN=porin PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 2.027e-12
Identity = 59/234 (25.21%), Postives = 107/234 (45.73%), Query Frame = 2
Query:   20 SGTKKGELFLA-DVNTQLKNKNITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVPDQ---RSGKVELQYLHDYAGISTSVGLTAN-PIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLAL 700
            S  + G++F + +   ++K+  +T   K +T + LFT + V D+   GLK  L      Q   ++GK ++ Y H+     + V +    P++N SAV+G      G   +FD++    T  N  L +   D +    +N+ G   + S +   +    VG ++  +  T++    +G ++ LD   +++A+VNNA       Q + R     T+S  VD K       K G+ L
Sbjct:   46 SNQESGKVFGSLETKYKVKDYGLTLTEKWNTDNTLFTEVAVQDQLLEGLKLSLEGNFAPQSGNKNGKFKVAYGHENVKADSDVNIDLKGPLINASAVLGYQGWLAGYQTAFDTQQSKLTTNNFALGYTTKDFVLHTAVND-GQEFSGSIFQRTSDKLDVGVQLSWASGTSNTKFAIGAKYQLDDDASVRAKVNNASQVGLGYQQKLRDGVTLTLSTLVDGKNFNAGGHKIGVGL 278          
BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC2_XENLA (Voltage-dependent anion-selective channel protein 2 OS=Xenopus laevis GN=vdac2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.648e-12
Identity = 66/245 (26.94%), Postives = 102/245 (41.63%), Query Frame = 2
Query:    2 GVATISSGTKKGELFLADVNTQLKNK----NITTDLKVDTASNLFTTITV-DEPAPGLKTILSFKVP-----DQRSGKVELQYLHDYAGISTSVGLT-ANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSA-KFGLAL 700
            GV   +SGT   +    + + + K K     +T   K +T + L T I + D+ A GLK  L+F         ++SGKV+  Y  +Y  +   V    A P ++ SAV+G      G  ++FDS     TK N  + +   D     N+N+ G   A S Y  V+        +  +         +  ++ LD    + A+VNN+ +         RP    T+S  VD K I     K GL L
Sbjct:   37 GVEFTTSGTSNTDSGKVNGSLETKYKWGEYGLTFTEKWNTDNTLGTEIAIEDQIAKGLK--LTFDTTFSPNTGKKSGKVKAAYKQEYVNLGCDVDFDFAGPAIHGSAVVGYEGWLAGYQMTFDSAKSKLTKNNFAVGYKTGDFQLHTNVND-GSEFAGSIYQKVSDKMETAVNLAWTSGNNSTRFGIAAKYQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGL 278          
The following BLAST results are available for this feature:
BLAST of CF834632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VDAC1_SOLTU1.845e-10680.08Mitochondrial outer membrane protein porin of 34 k... [more]
VDAC2_SOLTU1.787e-10177.12Mitochondrial outer membrane protein porin of 36 k... [more]
VDAC_PEA6.578e-9675.42Outer plastidial membrane protein porin OS=Pisum s... [more]
VDAC1_ARATH3.991e-9374.58Mitochondrial outer membrane protein porin 1 OS=Ar... [more]
VDAC2_ARATH5.049e-8867.52Mitochondrial outer membrane protein porin 2 OS=Ar... [more]
VDAC1_ORYSJ1.053e-8565.53Mitochondrial outer membrane protein porin OS=Oryz... [more]
VDAC1_WHEAT4.140e-8264.83Mitochondrial outer membrane porin OS=Triticum aes... [more]
VDAC_MAIZE3.177e-7458.90Outer plastidial membrane protein porin OS=Zea may... [more]
VDAC_DROME2.027e-1225.21Voltage-dependent anion-selective channel OS=Droso... [more]
VDAC2_XENLA2.648e-1226.94Voltage-dependent anion-selective channel protein ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834632 ID=CF834632; Name=CF834632; organism=Citrus sinensis; type=EST; length=703bp
TGGAGTTGCTACTATATCATCTGGAACGAAAAAGGGTGAGCTGTTTCTAG
CTGATGTTAATACCCAGCTGAAGAACAAGAATATCACAACTGATCTCAAA
GTGGACACTGCCTCCAATCTTTTCACAACTATCACTGTTGATGAACCTGC
TCCTGGGCTGAAAACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTG
GCAAGGTTGAACTCCAGTATTTGCATGATTATGCGGGGATAAGCACAAGT
GTCGGCTTAACAGCGAATCCTATTGTTAACTTCTCGGCTGTGATTGGTAC
TAATGTTCTCTCTCTTGGTACTGATCTGTCATTTGACTCCAAATCTGGGA
ACTTCACTAAATGCAATGCTGGTCTGAGCTTCAACGATGCCGACCTTATT
GCTTCATTGAATTTGAACAACAAAGGTGATTCCCTGGCTGCATCCTACTA
CCACTTTGTTAATCCCTTGACAGCTGTTGGTGCAGAAGTAATCCATAGCT
TCTCAACCACTGACAATACCATCACTGTTGGGACCCAGCACATATTAGAT
CCACTGACCACATTGAAGGCGCGAGTGAACAATGCTGGCATTGCTAGTGC
TCTCATCCAGCATGAGTGGCGTCCAAAGTCGTTGTTCACCATTTCTGGTG
AGGTGGACACCAAGGCCATTGAGAAGAGTGCCAAATTTGGACTGGCATTG
GCT
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