CF834634

Overview
NameCF834634
Unique NameCF834634
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1236..1718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 8.535e-40
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPIPEGCTDPTAENFDPTARNDDGSCQY 314
            IGK LVNS+E  P FEQP MT +KL+EYGNM+V EQENV  V +A+ YLS+AALG+ANADAI  G FYGK AQQ+N+P+PEGCTDP AENFDPTAR+DDG+C Y
Sbjct:  369 IGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 1.610e-38
Identity = 70/106 (66.04%), Postives = 88/106 (83.02%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPIPEGCTDPTAENFDPTARNDDGSCQYTL 320
            +GK LVNSK+  P FEQP MT+ KL+EYGNM+VQEQENV  V +AD+Y+S AALG+AN DAI  G F+GKAAQQ+++P+ +GCTDP A+N+DPTAR+DDGSC Y L
Sbjct:  367 VGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 2.746e-38
Identity = 72/106 (67.92%), Postives = 93/106 (87.74%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPIPEGCTDPTAENFDPTARNDDGSCQYT 317
            IGK LVNS+E  P FEQP+MT++KL+EYG M+V+EQENV  V +A++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+P+PEGCTDP A+NFDPTAR+DDGSC YT
Sbjct:  360 IGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.746e-38
Identity = 77/106 (72.64%), Postives = 90/106 (84.91%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPIPEGCTDPTAENFDPTARNDDGSCQY 314
            IGK LVNSKE  P+FEQP+MT+DKLL YG M+VQEQENV  V +ADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVP+PEGCTDP A N+DPTAR+DDGSC Y
Sbjct:  369 IGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 2.324e-37
Identity = 69/105 (65.71%), Postives = 90/105 (85.71%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPIPEGCTDPTAENFDPTARNDDGSCQYT 317
            IGK LVNS++   TFEQP+MT++KLLEYG+M+VQEQ+NV  V +AD Y+S+AALG+AN DA+++G+FYGK AQQ  +P+PEGCTD  A+N+DPTAR+DDGSC YT
Sbjct:  359 IGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.256e-24
Identity = 52/69 (75.36%), Postives = 61/69 (88.41%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYG 209
            IGK LVNSKE  PTFEQP+MT++KLLEYGNM+VQEQENV  V +ADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  369 IGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.112e-22
Identity = 49/67 (73.13%), Postives = 58/67 (86.57%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNF 203
            IGK LVNSKE  PTFEQP+MT+DKLL+YGNM+V+EQENV  V +ADKY+SEAALG+AN DAI+ G F
Sbjct:  369 IGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 2.758e-22
Identity = 48/67 (71.64%), Postives = 59/67 (88.06%), Query Frame = 3
Query:    6 GKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFY 206
            GK LVNSKE  PTF+QP+M++DKLL+YGNM+VQEQENV  V +ADKYL+EAALG AN DAI+SG+F+
Sbjct:  372 GKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 3.603e-22
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFYGK 212
            I K LVNS+E  PTF+QP+MT++KL+EYG+M+VQEQENV  V +ADKYLSEAALG+AN DA+++G FYGK
Sbjct:  356 ISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of CF834634 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.050e-21
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 3
Query:    3 IGKSLVNSKEAAPTFEQPRMTMDKLLEYGNMIVQEQENVNTVHVADKYLSEAALGEANADAIQSGNFY 206
            IG  L+NS +  PTFEQP+MT++KLLEYGNM+VQEQENV  V +ADKYL EAALG+ANADAI +G+F+
Sbjct:  373 IGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of CF834634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_ARATH8.535e-4071.15Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL1.610e-3866.04Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ2.746e-3867.92Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR2.746e-3872.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU2.324e-3765.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO2.256e-2475.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR2.112e-2273.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.758e-2271.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU3.603e-2268.57Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC3.050e-2169.12Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834634 ID=CF834634; Name=CF834634; organism=Citrus sinensis; type=EST; length=483bp
GCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAGCCCCAACATTCGAG
CAACCAAGGATGACAATGGATAAGCTGCTCGAGTACGGAAACATGATTGT
GCAAGAGCAAGAGAATGTGAACACAGTTCATGTGGCTGACAAGTATTTGA
GTGAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAAT
TTCTATGGCAAAGCAGCCCAGCAAATGAATGTTCCAATTCCTGAAGGATG
TACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAATGATGATG
GAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAAGGTTGACAAGTGT
CGCACTTTGCTTAGGATGTGAGATATTCAAATAATATTGCTGCATTATCA
TTTCTTTGGTAATTAGAAAGAATCCTCTAATTTTGTGTTATATCACAACT
CTTTATTCGATCTTTAGAAAAAAAAAAAAAAAA
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