CF834636

Overview
NameCF834636
Unique NameCF834636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9734 contig Csv1_Contig9734:114..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS3_SPIOL (Ribose-phosphate pyrophosphokinase 3, mitochondrial OS=Spinacia oleracea GN=PRS3 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.054e-23
Identity = 67/143 (46.85%), Postives = 83/143 (58.04%), Query Frame = 1
Query:    7 KTPAAFISQ--KPPSPLFLKFTSNCNSKLLCANRSQTIQCGQIKSFENQPQKWSIDFK-SGSEPIHLIQNXXXXXXXXXXXXXXRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            K PA   S+  KP S   L   S+  S  L   R  T +C     F+N+ +  ++D   S   PI ++ N                 KKVCLFYCPET +LAER+AAQSDAI+LRSI+WR F+DGFPNLFI NA GIRG+HVA
Sbjct:   14 KNPAISSSETLKPSSSFSL---SSNPSIPLIRRRLPTFRC----DFQNRRKWMNVDHHISKLNPIQIVPNSRRFQMSSNQENSVEFSKKVCLFYCPETKALAERIAAQSDAIQLRSISWRTFEDGFPNLFISNAQGIRGKHVA 149          
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS3_ARATH (Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsis thaliana GN=PRS3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.376e-23
Identity = 62/131 (47.33%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   43 SPLFLKFTSNCNSKLLCANRSQTIQCGQIKSFENQPQKWSIDFKSGSEPIHLIQ---NXXXXXXXXXXXXXXRTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            SP FL F +   S       ++ I+CG ++S EN     S+DF S  +PI LI    +              ++ K+VCLF+  ET  LAER+ A+SD IELRSINW+KF DGFPNLFI NA GIRGQHVA
Sbjct:   32 SPSFLNFKTASVS-------NRCIKCG-VRSLENHSGHRSLDFLSNGDPISLINPNSSSPITMAAATSESGSKSSKRVCLFHSDETRDLAERIVAKSDCIELRSINWKKFDDGFPNLFIQNAQGIRGQHVA 154          
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS4_ARATH (Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsis thaliana GN=PRS4 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 2.779e-16
Identity = 40/56 (71.43%), Postives = 43/56 (76.79%), Query Frame = 1
Query:  259 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            KKV LFYC E   LA  +AA+SD I L+SINWR F DGFPNLFI NAH IRGQHVA
Sbjct:   26 KKVHLFYCLECEELARNIAAESDHITLQSINWRSFADGFPNLFINNAHDIRGQHVA 81          
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS4_ORYSJ (Ribose-phosphate pyrophosphokinase 4 OS=Oryza sativa subsp. japonica GN=Os02g0714600 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.629e-16
Identity = 39/59 (66.10%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  250 RTMKKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            +  K++ LFYC E   LA +VAA SD I L+SINWR F DGFPNLFI NAH IRGQHVA
Sbjct:   10 KAKKQINLFYCSECEELALKVAASSDTIHLQSINWRSFDDGFPNLFINNAHDIRGQHVA 68          
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS3_ORYSJ (Ribose-phosphate pyrophosphokinase 3 OS=Oryza sativa subsp. japonica GN=Os01g0723600 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.191e-16
Identity = 39/56 (69.64%), Postives = 44/56 (78.57%), Query Frame = 1
Query:  259 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            K V LF+C E   LAE+V A++D IELRSI+WR F DGFPNLFI NAH IRGQHVA
Sbjct:   97 KNVLLFHCEEMRELAEQVVARNDDIELRSISWRTFADGFPNLFISNAHTIRGQHVA 152          
BLAST of CF834636 vs. ExPASy Swiss-Prot
Match: KPRS4_SPIOL (Ribose-phosphate pyrophosphokinase 4 OS=Spinacia oleracea GN=PRS4 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.352e-15
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query:  259 KKVCLFYCPETHSLAERVAAQSDAIELRSINWRKFKDGFPNLFIPNAHGIRGQHVA 426
            K+V LFYC E   LA +VAAQS  I L+SINWR F DGFPNLFI NA  IRGQHVA
Sbjct:    7 KQVLLFYCVEAEELARKVAAQSPLITLQSINWRSFDDGFPNLFINNAQDIRGQHVA 62          
The following BLAST results are available for this feature:
BLAST of CF834636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KPRS3_SPIOL1.054e-2346.85Ribose-phosphate pyrophosphokinase 3, mitochondria... [more]
KPRS3_ARATH1.376e-2347.33Ribose-phosphate pyrophosphokinase 3 OS=Arabidopsi... [more]
KPRS4_ARATH2.779e-1671.43Ribose-phosphate pyrophosphokinase 4 OS=Arabidopsi... [more]
KPRS4_ORYSJ3.629e-1666.10Ribose-phosphate pyrophosphokinase 4 OS=Oryza sati... [more]
KPRS3_ORYSJ6.191e-1669.64Ribose-phosphate pyrophosphokinase 3 OS=Oryza sati... [more]
KPRS4_SPIOL2.352e-1569.64Ribose-phosphate pyrophosphokinase 4 OS=Spinacia o... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834636 ID=CF834636; Name=CF834636; organism=Citrus sinensis; type=EST; length=427bp
CGTTTGAAGACCCCTGCAGCGTTCATTTCCCAAAAACCTCCATCTCCACT
TTTTCTCAAATTCACCAGCAACTGCAATTCAAAGCTCTTATGCGCCAACA
GAAGCCAAACTATTCAGTGTGGACAAATCAAGAGCTTCGAGAATCAACCT
CAGAAATGGAGCATTGATTTCAAGTCCGGTTCGGAGCCTATTCATTTGAT
CCAAAATTCTATTTCCACCGCCGCCACGTCTGCCTCGGAATCGGCTTCCA
GGACTATGAAAAAGGTCTGCCTTTTTTACTGCCCCGAGACCCATTCGCTT
GCTGAGCGAGTGGCTGCTCAGTCTGATGCCATTGAGCTCCGTAGCATCAA
CTGGAGGAAATTCAAAGATGGATTCCCCAACTTATTTATACCAAATGCTC
ATGGCATTCGTGGACAGCATGTAGCTT
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