CF834642

Overview
NameCF834642
Unique NameCF834642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3552 contig Csv1_Contig3552:409..1126. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF834642 vs. ExPASy Swiss-Prot
Match: VATH_ARATH (V-type proton ATPase subunit H OS=Arabidopsis thaliana GN=VHA-H PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.112e-82
Identity = 156/238 (65.55%), Postives = 176/238 (73.95%), Query Frame = 3 
Query:    3 RLFPYKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPAVEYLATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPKGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXXKDNIKRL 716
            RLF  +SLA+EDTYEPFLRLLWKGNWFIQEKSCKILA I+SARPK  +    NG           IDDVLK LVEWLCAQLK+PSHP+RGVP+AI+CL++LLKEP+VRSSFVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLSYYEPA+EYLAT+RT+ RL +               L  RNLLPKG F AQM+DLGLP ++ SLK QAWS               KD IK+L
Sbjct:   93 RLFHDESLANEDTYEPFLRLLWKGNWFIQEKSCKILAWIISARPKAGNAVIGNG-----------IDDVLKGLVEWLCAQLKQPSHPTRGVPIAISCLSSLLKEPVVRSSFVQADGVKLLVPLISPASTQQSIQLLYETCLCIWLLSYYEPAIEYLATSRTMQRLTEVVKHSTKEKVVRVVILTFRNLLPKGTFGAQMVDLGLPHIIHSLKTQAWSDEDLLDALNQLEEGLKDKIKKL 319
[Close]
BLAST of CF834642 vs. ExPASy Swiss-Prot
Match: VATH_ORYSJ (Probable V-type proton ATPase subunit H OS=Oryza sativa subsp. japonica GN=Os07g0549700 PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.077e-77
Identity = 144/237 (60.76%), Postives = 175/237 (73.84%), Query Frame = 3 
Query:    6 LFPYKSLASEDTYEPFLRLLWKGNWFIQEKSCKILASIVSARPKPQDRFFANGEASNSKSKSTTIDDVLKLLVEWLCAQLKKPSHPSRGVPVAINCLAALLKEPMVRSSFVQADGVKLLTPLISPASTQQSIQLLYETCLCVWLLSYYEPAVEYLATTRTLPRLIDXXXXXXXXXXXXXXXLILRNLLPKGNFAAQMIDLGLPQVVQSLKAQAWSXXXXXXXXXXXXXXXKDNIKRL 716
            LF   SL+ ED Y+PFLRLL KGNWF+QEKSCKIL  I+SARPK Q+    NGEASNSKSK T+  DVL+ LV+WLC+QL+ P+HP+  VP A++CLA LL+E  VR+ FVQADGVKLL PLISPASTQQSIQLLYETCLC+WLLS+Y+ AV+YL+TTR +PRL++               + +RNLL KG FAAQMIDLGLP +VQ+LKAQAW+               KDN+K+L
Sbjct:   94 LFYDNSLSGEDIYDPFLRLLLKGNWFVQEKSCKILTQIISARPKMQNGIVPNGEASNSKSKLTSTQDVLRGLVDWLCSQLRNPTHPNCSVPTAMHCLATLLREQYVRALFVQADGVKLLIPLISPASTQQSIQLLYETCLCIWLLSFYDAAVDYLSTTRVMPRLVEVVKGSTKEKVVRVVIMSIRNLLAKGAFAAQMIDLGLPHIVQNLKAQAWTDEDLLDALNQLEIGLKDNLKKL 330
The following BLAST results are available for this feature:
BLAST of CF834642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATH_ARATH1.112e-8265.55V-type proton ATPase subunit H OS=Arabidopsis thal... [more]
VATH_ORYSJ1.077e-7760.76Probable V-type proton ATPase subunit H OS=Oryza s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05N23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834642 ID=CF834642; Name=CF834642; organism=Citrus sinensis; type=EST; length=718bp
CCAGATTATTCCCTTATAAATCTCTTGCAAGTGAAGATACTTACGAACCT
TTCCTAAGATTGCTGTGGAAAGGTAATTGGTTCATACAAGAAAAGAGCTG
TAAGATATTAGCTTCGATTGTAAGTGCTAGGCCAAAACCACAGGATCGCT
TTTTTGCTAATGGGGAAGCCTCAAATTCAAAAAGCAAATCCACTACCATT
GATGATGTTTTAAAATTATTGGTTGAATGGCTTTGTGCACAGCTGAAGAA
GCCTTCCCATCCTAGTCGTGGCGTTCCAGTTGCTATCAATTGCCTTGCAG
CATTACTGAAGGAACCTATGGTGAGATCTTCCTTCGTTCAAGCAGATGGG
GTGAAGCTGTTGACCCCTTTAATTTCACCTGCATCCACGCAGCAATCTAT
CCAGCTTCTTTATGAAACATGTCTCTGCGTCTGGCTCTTGTCTTACTATG
AACCTGCAGTGGAGTACTTGGCAACTACTAGAACCCTGCCACGACTAATA
GATGTTGTTAAGAGTTCCACAAAGGAGAAGGTTGTCAGGGTGGTGGTCTT
GATCCTTAGGAACTTGCTTCCCAAAGGTAATTTTGCTGCTCAGATGATAG
ACCTTGGACTACCTCAAGTTGTTCAAAGTTTAAAAGCACAAGCATGGAGT
GATGAGGATTTACTAGAGGGTCTGAATCAACTGGAAGAAGGTTTGAAGGA
TAATATTAAGAGATTGAG
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