CF834647

Overview
NameCF834647
Unique NameCF834647
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.313e-27
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = -3
Query:  585 VEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 827
            VEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  116 VEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.040e-24
Identity = 50/81 (61.73%), Postives = 71/81 (87.65%), Query Frame = -3
Query:  585 VEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 827
            VE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  117 VELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: UPTG_PEA (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Pisum sativum GN=UPTG PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 7.503e-23
Identity = 51/78 (65.38%), Postives = 63/78 (80.77%), Query Frame = -1
Query:  266 QELIPFFQSATLPKECTTVQKCYIELAKQVKAKLGKVDEYFIKLADAMVTWIEAWDELNPPSGAKSTEL-PNGAAATK 496
            +E+IPFFQ+ATL K+CT+VQKCYIEL+KQVK KLG +D YFIKLADAMVTW+EAWDE+N     ++T    +  AATK
Sbjct:  287 EEIIPFFQAATLSKDCTSVQKCYIELSKQVKEKLGTIDPYFIKLADAMVTWVEAWDEINNNKSEETTSTKASEVAATK 364          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: UPTG2_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 2 OS=Solanum tuberosum GN=UPTG2 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.183e-22
Identity = 50/74 (67.57%), Postives = 61/74 (82.43%), Query Frame = -1
Query:  275 QELIPFFQSATLPKECTTVQKCYIELAKQVKAKLGKVDEYFIKLADAMVTWIEAWDELNPPSGAKSTELPNGAA 496
            +E+IPF QSATLPK+CT+VQ+CY+EL+KQVK KL  +D YF KLADAMVTWIEAWDELN P+G    +LP+  A
Sbjct:  288 EEIIPFSQSATLPKDCTSVQQCYLELSKQVKEKLSTIDPYFTKLADAMVTWIEAWDELN-PTGEGLAKLPSRTA 360          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: UPTG1_SOLTU (Alpha-1,4-glucan-protein synthase [UDP-forming] 1 OS=Solanum tuberosum GN=UPTG1 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.083e-21
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = -1
Query:  320 N*ISISQELIPFFQSATLPKECTTVQKCYIELAKQVKAKLGKVDEYFIKLADAMVTWIEAWDELN 514
            N I   +E+IPFFQ+ATLPKECTTVQ+CY+EL+KQVK KL  +D YF KL +AMVTWIEAWDELN
Sbjct:  278 NGIFWQEEIIPFFQAATLPKECTTVQQCYLELSKQVKKKLSSIDPYFTKLGEAMVTWIEAWDELN 342          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: UPTG_MAIZE (Alpha-1,4-glucan-protein synthase [UDP-forming] OS=Zea mays GN=UPTG PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.117e-21
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = -1
Query:  305 QELIPFFQSATLPKECTTVQKCYIELAKQVKAKLGKVDEYFIKLADAMVTWIEAWDELNPPSGA 496
            +++IPFFQ+ T+PK+C TVQKCYI L+ QVK KLG +D YF+KL DAMVTWIEAWDELNP + A
Sbjct:  294 EDIIPFFQNVTIPKDCDTVQKCYIYLSGQVKEKLGTIDPYFVKLGDAMVTWIEAWDELNPSTPA 357          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.530e-18
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = -3
Query:  585 VEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 827
            VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  147 VEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.506e-15
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = -3
Query:  585 VEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 827
            VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   89 VEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CF834647 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.355e-15
Identity = 41/78 (52.56%), Postives = 54/78 (69.23%), Query Frame = -3
Query:  597 VEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 827
            VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   84 VEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
The following BLAST results are available for this feature:
BLAST of CF834647 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ELI_PEA1.313e-2776.54Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL1.040e-2461.73Desiccation stress protein DSP-22, chloroplastic O... [more]
UPTG_PEA7.503e-2365.38Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
UPTG2_SOLTU2.183e-2267.57Alpha-1,4-glucan-protein synthase [UDP-forming] 2 ... [more]
UPTG1_SOLTU1.083e-2172.31Alpha-1,4-glucan-protein synthase [UDP-forming] 1 ... [more]
UPTG_MAIZE4.117e-2168.75Alpha-1,4-glucan-protein synthase [UDP-forming] OS... [more]
ELI5_HORVU5.530e-1856.63High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.506e-1551.22Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.355e-1552.56Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05O04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834647 ID=CF834647; Name=CF834647; organism=Citrus sinensis; type=EST; length=829bp
TTTTTTTTTTTTTTTTTCCGAAAACATAATAATCATAATAATCTCCATCT
ACGTCCAATGAAACAAGCTAACACTCAACCTAGTCAATACATAAACTCGA
CGCTTGCTTATTGTTCTAAACTCAATAACATTGTAATAAATAAAATTATA
CCCCTCCGATCTGCAAAATAAATATTCCAAGCCCCGAAGCAGAAGCTCGA
ACAAATGGCTGTGAACTGTGTCTATGACTATCAAAAGGGATGATAAATGT
TGATCAAGTAATCTATTTTGTAGCAGCAGCACCGTTAGGCAACTCTGTGG
ATTTTGCTCCAGATGGTGGGTTCAGTTCATCCCATGCTTCGATCCATGTG
ACCATTGCGTCGGCCAGCTTGATGAAGTATTCATCAACCTTACCAAGTTT
TGCCTTAACTTGCTTGGCCAGTTCAATGTAGCACTTCTGCACGGTGGTGC
ATTCCTTTGGAAGTGTGGCAGATTGGAAGAATGGGATCAGCTCTTGAGAA
ATAGAGATTTAATTACAGTAGGATCTCATACATTAATTAGTTAAAAAAAA
TACAGATCTACAGATCTAAACAAAATTAAGCTTAAACAAGGGTGCCACCC
TTAACAAACTCGGTGAAAGCCAAAGCAACAAGGCCCAGCATAGCAAACCT
CCCATTCCACAACTCAGCATCCGAAGTCATGAACCCATCCGATTTAGACT
CCACGCTGACACCTTTAAACAAAGGAACCAGGGACGCAACCGTGAGCAAA
ACACTGGTCCCCAAGAACCAGGCAACCCCACCGTCTGATAACTGGGCAAA
CACATCCTGACCCTTGGATATCTCCACCC
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