CF834658

Overview
NameCF834658
Unique NameCF834658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig960 contig Csv1_Contig960:115..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834658 vs. ExPASy Swiss-Prot
Match: PRF1_SOLLC (36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.738e-16
Identity = 43/83 (51.81%), Postives = 49/83 (59.04%), Query Frame = 2 
Query:   74 IDTLKLGACDDVLGGLVHIGIGSSAKDACCPVLQGXXXXXXXXXXXXXXXXXXXXXXXXXPIALEVLI-DCGKHPPPGFQCPA 319
            ID LKLGAC DVLGGL+HIGIG SAK  CCP+L G                         PIAL+VLI DCGK+PP  F+CP+
Sbjct:  263 IDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345
The following BLAST results are available for this feature:
BLAST of CF834658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRF1_SOLLC2.738e-1651.8136.4 kDa proline-rich protein OS=Solanum lycopersi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05O11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834658 ID=CF834658; Name=CF834658; organism=Citrus sinensis; type=EST; length=468bp
TACCCCAAGCCCTAGCCCACCACCACCCCCTAAAGGAACACCGTGTCCTC
CGCCGCCGCCACCAACTTGTCCCATTGATACTCTCAAGCTTGGTGCATGC
GACGACGTGTTGGGTGGTCTAGTACACATCGGTATAGGCAGCAGTGCAAA
GGACGCTTGCTGCCCCGTGCTGCAGGGGCTACTGGACTTGGATGCTGCAT
TATGTCTTTGCACCACCATTAAACTTAAGCTTTTGAATATCAATCTTATT
ATACCGATCGCCCTTGAAGTGCTTATTGACTGCGGCAAGCATCCGCCGCC
CGGATTCCAGTGTCCTGCCTAATTGGTGACGCTTTCCAGCCATGCAATTG
ATGAATGCGACTTGTTTGTTTTGGAGATTTTGTCCAAGATAATGACATGT
AAGTGCATAAAGTGGAAGTACTTCATGATATCGAAGTTTGTCTTAATATA
TGTTTTGTTCCTCTTGTG
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