CF834661

Overview
NameCF834661
Unique NameCF834661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9752 contig Csv1_Contig9752:601..1117. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_SOLSC (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 2.380e-28
Identity = 65/78 (83.33%), Postives = 65/78 (83.33%), Query Frame = -2
Query:  283 KYGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLASAK 516
            KYGAGIGPGVYDI  PRIPSTEEIADRINKMLAVLETNIL VNPD G KTRK  E KPAL NMV  AKL R QLASAK
Sbjct:  687 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALENMVAAAKLLRTQLASAK 764          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_CATRO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 9.042e-28
Identity = 64/78 (82.05%), Postives = 65/78 (83.33%), Query Frame = -2
Query:  283 KYGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLASAK 516
            KYGAGIGPGVYDI  PRIPSTEEIADRINKMLAVL+TNIL VNPD G KTRK  E KPAL NMV  AKL R QLASAK
Sbjct:  688 KYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLDTNILWVNPDCGLKTRKYAEVKPALENMVSAAKLIRTQLASAK 765          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_ARATH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.631e-27
Identity = 63/78 (80.77%), Postives = 65/78 (83.33%), Query Frame = -2
Query:  283 KYGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLASAK 516
            KYGAGIGPGVYDI  PRIPS+EEIADR+NKMLAVLE NIL VNPD G KTRK TE KPAL NMV  AKL R QLASAK
Sbjct:  688 KYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGLKTRKYTEVKPALKNMVDAAKLIRSQLASAK 765          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_MESCR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.165e-25
Identity = 58/78 (74.36%), Postives = 62/78 (79.49%), Query Frame = -2
Query:  283 KYGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLASAK 516
            KYGAGIGPGVYDI  PRIP TEE+ADRI KMLAVLE+N+L VNPD G KTRK  E  PALSNMV  AK  R +LASAK
Sbjct:  688 KYGAGIGPGVYDIHSPRIPPTEELADRIRKMLAVLESNVLWVNPDCGLKTRKYGEVNPALSNMVAAAKQLRQELASAK 765          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_DICDI (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Dictyostelium discoideum GN=metE PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.336e-14
Identity = 39/70 (55.71%), Postives = 48/70 (68.57%), Query Frame = -2
Query:  304 YGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFR 513
            Y   IGPG+YDI  PRIPS E++ DR+ +ML  L TN+L +NPD G KTR+    + AL NMV VAK FR
Sbjct:  749 YTNEIGPGLYDIHSPRIPSVEDMKDRVEQMLKYLSTNLLWINPDCGLKTREPETTRLALINMVKVAKQFR 818          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_CYTH3 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=metE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 37/75 (49.33%), Postives = 49/75 (65.33%), Query Frame = -2
Query:  289 YGAGIGPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLAS 513
            Y   IGPGVYDI  PRIP+T+E+AD +NK + VL    + VNPD G KTR+  E + AL NMV  A+  R ++ +
Sbjct:  699 YPNEIGPGVYDIHSPRIPTTDEMADLLNKAMHVLPVRNIWVNPDCGLKTRRWPETEAALINMVAAAQKIRKEITT 773          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_BIFAA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083) GN=metE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = -2
Query:  292 GPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQLA 498
            GPGVYDI  PRIPS +EI DRI ++L  ++   + +NPD G KTR + E  P+L N+V  AK  R +LA
Sbjct:  699 GPGVYDIHSPRIPSEQEIEDRIYEILKKMDVEKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKLA 767          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_BIFA0 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium animalis subsp. lactis (strain AD011) GN=metE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.956e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  295 GPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQL 498
            GPGVYDI  PRIPS EE  +RI + LA ++ N + +NPD G KTR + E  P+L++MV  AK  R  L
Sbjct:  699 GPGVYDIHSPRIPSVEETEERIGESLAKMDVNKVWINPDCGLKTRGNDETWPSLTHMVQAAKAMRANL 766          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_BIFLO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum GN=metE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  295 GPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQL 498
            GPGVYDI  PRIPS +EI DRI ++L  ++   + +NPD G KTR + E  P+L N+V  AK  R +L
Sbjct:  698 GPGVYDIHSPRIPSEKEIEDRIYEILDKMDVKKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKL 765          
BLAST of CF834661 vs. ExPASy Swiss-Prot
Match: METE_BIFLD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bifidobacterium longum (strain DJO10A) GN=metE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 34/68 (50.00%), Postives = 45/68 (66.18%), Query Frame = -2
Query:  295 GPGVYDIPFPRIPSTEEIADRINKMLAVLETNILGVNPDWGFKTRKSTEGKPALSNMVVVAKLFRPQL 498
            GPGVYDI  PRIPS +EI DRI ++L  ++   + +NPD G KTR + E  P+L N+V  AK  R +L
Sbjct:  698 GPGVYDIHSPRIPSEKEIEDRIYEILDKMDVKKVWINPDCGLKTRGNAETWPSLENLVAAAKAVRAKL 765          
The following BLAST results are available for this feature:
BLAST of CF834661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
METE_SOLSC2.380e-2883.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CATRO9.042e-2882.055-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ARATH2.631e-2780.775-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MESCR7.165e-2574.365-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DICDI3.336e-1455.715-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CYTH38.217e-1349.335-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFAA4.078e-1250.725-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFA06.956e-1251.475-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLO2.024e-1150.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BIFLD2.024e-1150.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O13_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834661 ID=CF834661; Name=CF834661; organism=Citrus sinensis; type=EST; length=517bp
TTTTTTTTTTTTTTTTTCTCTTTGCAAAACCAGTAAAGGGATTCCATCGA
TTTACGGCCCCTGATAGCAAGCCGGGGCCTTTAAAAACGGAAAATACCAG
CAAAGAAAAATAGAAGCCAATTGCTCAATAATGCATAATATGCATACGGA
AAATTTTCATCACATCACGACCCACGGGTATTCCAATAGGGAATAAAACA
GGAATTTTCTTTCTTTGTTTAAAGGGAAAAAAAAAAAAATCAATGGGTCC
GGAAATATCCCTCCAATCTCCAAAACCACTCACTTGGCACTGGCAAGCTG
GGGGCGGAATAACTTGGCAACAACCACCATGTTTGAAAGGGCTGGCTTCC
CCTCAGTGGACTTGCGAGTCTTAAAACCCCAGTCAGGGTTAACCCCCAAA
ATGTTGGTTTCTAACACAGCAAGCATCTTGTTGATTCTGTCAGCAATTTC
TTCAGTTGATGGGATTCTTGGAAAGGGGATGTCATACACACCAGGGCCAA
TTCCCGCACCATACTTG
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