CF834673

Overview
NameCF834673
Unique NameCF834673
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8564 contig Csv1_Contig8564:774..1434. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834673 vs. ExPASy Swiss-Prot
Match: PX24D_DICDI (PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.578e-13
Identity = 32/97 (32.99%), Postives = 53/97 (54.64%), Query Frame = 3
Query:    3 RMGRYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFI 293
            RM  +G  + GP  H+WF ++ K FPK+       K+ + Q +  P+   +F S    L+G+S ++IV +LK+D L T     + WP  +F+ F +I
Sbjct:   62 RMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSGMGILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYI 158          
BLAST of CF834673 vs. ExPASy Swiss-Prot
Match: PX24C_DICDI (PXMP2/4 family protein 3 OS=Dictyostelium discoideum GN=DDB_G0290223 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 38/119 (31.93%), Postives = 64/119 (53.78%), Query Frame = 3
Query:   24 LILGPTLHFWFNFVSKLFPK-QDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTYTASLEK 377
            LI  P +H+W   + +LF   +D   +  K+ + Q ++ P + + F S+ A L G+  + I+ +L  DL PT+      WP+   I FRF+P HL+ L  N   + W IYL+  A+ ++
Sbjct:   66 LISSPLVHYWHIILDRLFKNIKDKYQSWGKLIVDQLVFAPFINIAFYSVLAILDGKP-KSILFKLYFDLFPTLKASWKVWPLAQLINFRFVPSHLRVLFGNLVGFCWGIYLSILATKKR 183          
BLAST of CF834673 vs. ExPASy Swiss-Prot
Match: MPV17_XENLA (Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 36/122 (29.51%), Postives = 59/122 (48.36%), Query Frame = 3
Query:    3 RMGRYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTYTAS 368
            +M   G   +GP +  W+  + ++ P       LKKM + Q  + P     FLS+ ++L G SGE+I  +LKRD    +      WP      F FIP++ +  V    + +W  YL++ A+
Sbjct:   54 KMMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLSIASALNGLSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKAN 175          
BLAST of CF834673 vs. ExPASy Swiss-Prot
Match: MPV17_DANRE (Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 37/122 (30.33%), Postives = 57/122 (46.72%), Query Frame = 3
Query:    3 RMGRYGMLILGPTLHFWFNFVSKLFPKQDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLTYTAS 368
            +M   G   +GP +  W+  + KL       A LKKM + Q  + P     FL +  +L G + EE VA+L+RD    +      WP      F FIP+H +  V    + +W  YL++ A+
Sbjct:   54 KMMSIGFFFVGPVVGGWYKVLDKLVTGGTKSAALKKMLVDQVGFAPCFLGAFLGITGTLNGLTVEENVAKLQRDYTDALISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLSWKAN 175          
BLAST of CF834673 vs. ExPASy Swiss-Prot
Match: MPV17_DROME (Mpv17-like protein OS=Drosophila melanogaster GN=CG11077 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 35/120 (29.17%), Postives = 58/120 (48.33%), Query Frame = 3
Query:    3 RMGRYGMLILGPTLHFWFNFVSKLFPK--QDLVATLKKMAMGQTIYGPIMTVVFLSLNASLQGESGEEIVARLKRDLLPTMFKGVMYWPVCDFITFRFIPVHLQPLVSNSFSYLWTIYLT 356
            R G  G++ +GPTL  W++F+    PK    +   + KM + QT++ P  T+    L     GE  + I  R+    L  + +  M WP    + FRF+P+  Q L +   + +W  YL+
Sbjct:   44 RFGIVGLVFVGPTLRRWYHFLESRVPKTYSPMRRGVTKMLVDQTLFAPPFTMAMSFLVPLSNGEPIDRIRQRILDSYLSILVRNYMLWPAAQMLNFRFVPLGYQVLYAQFIALVWNCYLS 163          
The following BLAST results are available for this feature:
BLAST of CF834673 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX24D_DICDI3.578e-1332.99PXMP2/4 family protein 4 OS=Dictyostelium discoide... [more]
PX24C_DICDI6.103e-1331.93PXMP2/4 family protein 3 OS=Dictyostelium discoide... [more]
MPV17_XENLA7.971e-1329.51Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2[more]
MPV17_DANRE1.151e-1130.33Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1[more]
MPV17_DROME3.349e-1129.17Mpv17-like protein OS=Drosophila melanogaster GN=C... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_05O19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834673 ID=CF834673; Name=CF834673; organism=Citrus sinensis; type=EST; length=661bp
TACGGATGGGCCGATATGGGATGTTAATTTTAGGTCCCACATTGCACTTT
TGGTTCAATTTTGTGTCAAAATTGTTTCCGAAGCAAGATCTGGTTGCTAC
ATTGAAGAAGATGGCAATGGGGCAGACAATTTATGGACCAATTATGACTG
TTGTGTTCTTATCACTGAATGCAAGTTTACAAGGTGAAAGTGGAGAAGAG
ATTGTTGCTCGATTAAAACGAGACTTGCTCCCTACCATGTTCAAGGGTGT
CATGTACTGGCCTGTATGTGATTTTATCACATTCAGATTCATCCCTGTCC
ATTTGCAGCCATTGGTGAGCAATTCATTTTCATATCTATGGACTATCTAT
CTGACGTATACGGCGAGTCTAGAAAAAGCTGTCACAACTGCAAGCTGATT
GGTTCAGTGTTCCCTCTATCCATCTCACGTTCAAGCCCAAGATCTACCTT
AGATACTCTCAGCTGATGGTTGACGCAGAACTGCTATGAACTTGATCCAT
TGCTCATGTAGACCAAGCAGCGCCCATTAATATTTTGTTCTTTTCTCTTA
GTGGTATTATTTACTAGATAATGCAATTGGACAACATATCAGAGGTTGTA
AAGTAGTGGGTTGATGACGTTATTTTAGTGGGCAATTTCCACAGTAAAAA
ACTGCTCTTGA
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