CF834676

Overview
NameCF834676
Unique NameCF834676
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11296 contig Csv1_Contig11296:510..1247. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 328.946 bits (842), Expect = 1.705e-89
Identity = 157/184 (85.33%), Postives = 166/184 (90.22%), Query Frame = -1
Query:  188 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYN 739
            YAATKKAGEEI HTYNHIYGL+ITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPIT+YRGKN VDLARDFTYIDDIVKGCLGSLD           KRG APYRIFNLGNTSPVTVP LV+ILE+ LKVKAK+N +EMPGNGDVPFTHANISSA+ EFGY+PTTDL+TGLKKFVRWYLSYYGYN
Sbjct:  239 YAATKKAGEEITHTYNHIYGLAITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITIYRGKNRVDLARDFTYIDDIVKGCLGSLDSSGKSTGSGGKKRGAAPYRIFNLGNTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETGLKKFVRWYLSYYGYN 422          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.356e-77
Identity = 140/189 (74.07%), Postives = 159/189 (84.13%), Query Frame = -1
Query:  173 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKRV 739
            YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV+ILER LKVKAK+N++++P NGDVPFTHANISSAQ+EFGY+P+TDLQTGLKKFVRWYL YY    GK+V
Sbjct:  243 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTGLKKFVRWYLGYYKQG-GKKV 430          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 9.703e-77
Identity = 138/181 (76.24%), Postives = 152/181 (83.98%), Query Frame = -1
Query:  197 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 739
            YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK I+++   NH  +ARDFTYIDDIVKGCL +LD           KRGPA  R+FNLGNTSPV V  LV ILER LKVKAKKN+I+MP NGDVPFTHANIS AQ+E GY+PTTDLQTGLKKFVRWYLSYY
Sbjct:  248 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGPAQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTGLKKFVRWYLSYY 428          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.073e-75
Identity = 138/188 (73.40%), Postives = 155/188 (82.45%), Query Frame = -1
Query:  176 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGKR 739
            YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FTR+IL+GK I+++ G NH  +ARDFTYIDDIVKGCLG+LD           KRG A  R+FNLGNTSPV V  LV ILER LKVKAK+N++++P NGDV FTHANISSAQ+E GY+PTTDLQTGLKKF RWYL Y  YN GK+
Sbjct:  242 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTRDILKGKAISIFEGVNHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGAAQLRVFNLGNTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTGLKKFARWYLGY--YNGGKK 427          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.772e-70
Identity = 125/182 (68.68%), Postives = 150/182 (82.42%), Query Frame = -1
Query:  194 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYG 739
            YAATKKAGEEIAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL GK I +YR +++ ++ARDFTYIDDIVKGC+G+LD           KRG A  R++NLGNTSPV V +LV+ILE  L  KAKK++I+MP NGDVP+THAN+S A K+FGY+PTTDL  GL+KFV+WY+ YYG
Sbjct:  263 YAATKKAGEEIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQAQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGYKPTTDLAAGLRKFVKWYVGYYG 444          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.559e-69
Identity = 125/187 (66.84%), Postives = 149/187 (79.68%), Query Frame = -1
Query:  179 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYYGYNRGK 739
            YAATKKAGE IAHTYNHIYGLS+TGLRFFTVYGPWGRPDMAYF FT++IL+GK ITV+   +   +ARDFTYIDDIVKGCLG+LD           K+GPA +RI+NLGNTSPV V KLV ILE+ LK+KAKK ++ +P NGDV FTHANI+ AQ E GY+P  DL+TGLKKFV+WY+ +Y  ++ K
Sbjct:  247 YAATKKAGEGIAHTYNHIYGLSLTGLRFFTVYGPWGRPDMAYFFFTKDILKGKTITVFESPDKGSVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGPAMFRIYNLGNTSPVPVTKLVTILEKLLKMKAKKKIMPLPRNGDVEFTHANITLAQAELGYKPAVDLETGLKKFVKWYMGFYTGSKKK 433          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.258e-41
Identity = 86/187 (45.99%), Postives = 118/187 (63.10%), Query Frame = -1
Query:  197 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP------APYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 739
            YAATKK+ E +AHTY+H+Y L  TGLRFFTVYGPWGRPDMA F FT+ I+  + I VY   NH ++ RDFTY+DDIV+  +  L               P      APY+++N+GN SPV + + V  +E  L  +A+KN +++   GDVP T+AN+    ++  ++P T +Q G+ KFV WYL YY
Sbjct:  151 YAATKKSNELMAHTYSHLYNLPTTGLRFFTVYGPWGRPDMALFKFTKAIVNDQAIDVY---NHGNMMRDFTYVDDIVE-AISRLVKKPASPNKEWSGADPDPGSSYAPYKVYNIGNNSPVRLMEFVEAIENKLGKEARKNYMDLQ-PGDVPETYANVDDLFRDIDFKPETTIQDGVNKFVDWYLEYY 332          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.030e-41
Identity = 87/186 (46.77%), Postives = 117/186 (62.90%), Query Frame = -1
Query:  197 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGP-----APYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 739
            YAATKKA E +AHTY+H+YGL  TGLRFFTVYGPWGRPDMA F FT+ +L+GK I VY   N+  + RDFTYIDDI +  +   D           + G      APYR++N+GN+SPV +   +  LE  L ++AKKN++ +   GDV  T A+  +  +  G+ P T ++ G+K FV WY  +Y
Sbjct:  151 YAATKKANELMAHTYSHLYGLPATGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVY---NYGKMKRDFTYIDDIAEAIIRLQDVIPHADTQWTVETGTPAASIAPYRVYNIGNSSPVELMDYIQALEDALGIEAKKNMLPLQ-PGDVLETSADTKALYEVIGFTPETTVKDGVKNFVNWYRDFY 332          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.336e-38
Identity = 80/178 (44.94%), Postives = 115/178 (64.61%), Query Frame = -1
Query:  206 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCLGSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYL 739
            YA+TK++ E +AH Y+H+YG+ + GLRFFTVYG +GRPDMAYF F +NIL GK I VY   N+ ++ RDFTYI D+V G L ++             +    Y IFNLGN+ PV +   + ++E+ L  KAKK  + M  +GDV  T+A++S ++K  GY+P   ++ GLK+F  W+L
Sbjct:  157 YASTKRSNELMAHVYHHLYGIKMIGLRFFTVYGEYGRPDMAYFKFAKNILLGKEIEVY---NYGNMERDFTYISDVVDGILRAI-------------KKDFDYEIFNLGNSKPVKLMYFIELIEKYLNKKAKKKFLPMQ-DGDVLRTYADLSKSEKLLGYKPKVTIEEGLKRFCNWFL 317          
BLAST of CF834676 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 9.839e-29
Identity = 72/187 (38.50%), Postives = 103/187 (55.08%), Query Frame = -1
Query:  197 YAATKKAGEEIAHTYNHIYGLSITGLRFFTVYGPWGRPDMAYFSFTRNILQGKPITVYRGKNHVDLARDFTYIDDIVKGCL------GSLDXXXXXXXXXXXKRGPAPYRIFNLGNTSPVTVPKLVNILERPLKVKAKKNVIEMPGNGDVPFTHANISSAQKEFGYRPTTDLQTGLKKFVRWYLSYY 739
            YAATKK+ E +AH+Y H+Y +  T  RFFTVYGPWGRPDMA F F   I  G+PI +Y G+    ++RDFTYIDD+V+  +       S +               AP+R+ N G   PV +   V  +E+ +   A  N++ M   GDVP T A+    +   G++P+  ++ G+ +FV WY   Y
Sbjct:  152 YAATKKSMELMAHSYAHLYKVPTTSFRFFTVYGPWGRPDMALFKFVDAIHNGRPIDIY-GEGR--MSRDFTYIDDLVESIVRLSHVPPSEENRVAPEKATDTLSRHAPFRVVNTGGGQPVELMTFVETVEKAVGRPAIHNMLPMQ-QGDVPRTFASPDLLEALTGFKPSVSVEEGVARFVEWYDQNY 334          
The following BLAST results are available for this feature:
BLAST of CF834676 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
GAE1_ARATH1.705e-8985.33UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE2_ARATH4.356e-7774.07UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH9.703e-7776.24UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE3_ARATH1.073e-7573.40UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE6_ARATH1.772e-7068.68UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
GAE5_ARATH2.559e-6966.84UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
CAPI_STAAU2.258e-4145.99Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
YCL2_ECO115.030e-4146.77Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
Y1055_METJA2.336e-3844.94Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME9.839e-2938.50UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834676 ID=CF834676; Name=CF834676; organism=Citrus sinensis; type=EST; length=739bp
TTTTTTTTTTTTTTTTCACCTTACAACGTTTTCTGTTCCTTTCGTCTTTT
TTAAGGAAAAAAACAAAAAAAAAAAACCCTCTAATCCCGCACCTCCCACG
GCGCGAAAACCCAAAAAAAAAAGAAAAAAAGAAGGTAAAACGCAAAAAAC
ATAAAGGAAAAAAAAATTAATTTACACGTTTGCCACGATTATAGCCGTAA
TATGAGAGATACCATCTAACAAATTTTTTCAAGCCGGTTTGCAAATCCGT
CGTGGGCCTGTACCCGAACTCCTTCTGGGCCGAACTGATATTCGCATGCG
TGAACGGGACGTCGCCGTTTCCAGGCATTTCGATTACATTCTTCTTGGCT
TTTACCTTCAGGGGTCTCTCCAATATATTCACCAGCTTAGGTACCGTGAC
CGGTGACGTGTTCCCCAAATTAAAGATCCGGTACGGTGCTGGGCCCCGCT
TCTTTCCGCCCGACCCGGTACTCTTACCCGAGGTATCCAGCGAACCTAAA
CAACCCTTCACGATATCGTCAATGTAAGTAAAATCTCGTGCCAAGTCGAC
GTGATTCTTCCCACGATAAACCGTGATTGGTTTGCCTTGGAGAATATTTC
TCGTGAACGAGAAGTAAGCCATATCGGGTCGGCCCCAGGGTCCGTACACG
GTGAAAAACCTCAGCCCGGTAATTGAGAGGCCGTAAATGTGATTGTAGGT
GTGAGCAATTTCTTCACCGGCCTTTTTGGTAGCCGCGTA
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