CF834677

Overview
NameCF834677
Unique NameCF834677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834677_ssr71 microsatellite CF834677_ssr71:71..82. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11400 contig Csv1_Contig11400:42..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE1_ARATH (UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thaliana GN=GAE1 PE=1 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 1.838e-96
Identity = 171/200 (85.50%), Postives = 188/200 (94.00%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            MPS+EDELFPSTPGKFKI+RSN   RQ HRCF STSTMFLWALFL+ALTASYLSFQSFVDSGSRY +ASWGGIQWEK VR+SAQIHRSGG+SVLVTGA GFVG+HVSLAL+KRGDGVVGLDNFNNYYDPSLK+AR++LL++ GIFV+EGD+NDAKLLAKLFD VAFTHVMHLAAQAGVRYA++NP SYVHSNIAGLV LL
Sbjct:    1 MPSIEDELFPSTPGKFKIDRSN---RQLHRCFASTSTMFLWALFLIALTASYLSFQSFVDSGSRYLTASWGGIQWEKQVRTSAQIHRSGGISVLVTGATGFVGSHVSLALRKRGDGVVGLDNFNNYYDPSLKRARRSLLSSRGIFVVEGDLNDAKLLAKLFDVVAFTHVMHLAAQAGVRYALENPQSYVHSNIAGLVNLL 197          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE5_ARATH (UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thaliana GN=GAE5 PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.288e-57
Identity = 120/208 (57.69%), Postives = 144/208 (69.23%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTASYL--------SFQSFVDSGSRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  L+D   PSTPGK+K ++        H  +   S + LWA   +AL   YL        S ++  DS S   +A +GG  WEK VR SA+    GG++VLVTGA+GFVGTHVS+AL++RGDGV+GLDNFN YYDP LK+AR+ LL   G+FV+EGDINDA LL KLFD V FTHVMHLAAQAGVRYAMQNP SYV+SNIAG V LL
Sbjct:    1 MSHLDD--LPSTPGKYKTDKVPPYGILHHHRYLRLSKLTLWASLFLALFLFYLVLSPPPSPSRRNLNDSSS-ISAAKYGGSHWEKQVRKSARPRSHGGLTVLVTGASGFVGTHVSIALRRRGDGVLGLDNFNRYYDPKLKRARQGLLERSGVFVVEGDINDAVLLRKLFDVVLFTHVMHLAAQAGVRYAMQNPGSYVNSNIAGFVNLL 205          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE3_ARATH (UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thaliana GN=GAE3 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.868e-57
Identity = 125/208 (60.10%), Postives = 144/208 (69.23%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCF--TSTSTMFLWALFLVALTASYLSFQSFVDSGSRYFSA------SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  L+D   PSTPGKFK          FHR    +S + +  W+L  V L   +  ++S V S     S       SWGG  WEK VRSSA++    G SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   G+FV+EGDINDA LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LL
Sbjct:    4 MSHLDD--IPSTPGKFK--------PYFHRTRWQSSVAKLAFWSLVFVGLIFIFF-YRSPVSSNPADPSRRSLRTYSWGGPAWEKRVRSSARLRTRRGFSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDPSLKRARQALLERSGVFVVEGDINDAALLKKLFEVVPFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLL 200          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE2_ARATH (UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thaliana GN=GAE2 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.346e-57
Identity = 120/203 (59.11%), Postives = 141/203 (69.46%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNRQFHRCFTSTSTMFLWALFLVALTAS--YLSFQSFVDSGSRYFSA-SWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  L+D   PSTPGKFK+   +       R  +S + +  W+L    L     Y S  S  DS  R     SWGG  WEK VRSSA++    G+SVLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYD SLK++R+ALL   G+F++EGDIND  LL KLF+ V FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LL
Sbjct:    1 MSHLDD--IPSTPGKFKMMDKSPFFLHRTRWQSSVAKLAFWSLVFFGLLFIFFYRSPISNPDSSRRSLRTYSWGGPAWEKRVRSSARVRTRNGVSVLVTGAAGFVGTHVSAALKRRGDGVLGLDNFNDYYDTSLKRSRQALLERSGVFIVEGDINDLSLLKKLFEVVPFTHVMHLAAQAGVRYAMENPGSYVHSNIAGFVNLL 201          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE4_ARATH (UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thaliana GN=GAE4 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.142e-56
Identity = 120/208 (57.69%), Postives = 151/208 (72.60%), Query Frame = 2
Query:  131 MPSLEDELFPSTPGKFKIERSNTMNR-QFHRCFTSTSTMFLWALFLVAL----TASYLSFQSFVDSGSRYFSAS-WGGIQWEKHVRSSAQIHRS--GGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  L+D   PS+PGKFK+E+S+ ++R +F    T  +    + L L++L    +   ++  S  D   R    + +GG  WEK +RSSA+I  S   G++VLVTGAAGFVGTHVS ALK+RGDGV+GLDNFN+YYDPSLK+AR+ALL   GIF++EGDIND +LL KLF  V+FTHVMHLAAQAGVRYAM+NP SYVHSNIAG V LL
Sbjct:    1 MSRLDD--IPSSPGKFKMEKSSYLHRLRFQSSLTKFAFFSFFLLCLISLLFLRSPPSINPSSPSDPSRRSLRTNTYGGPAWEKRLRSSARIRTSTNNGITVLVTGAAGFVGTHVSAALKRRGDGVIGLDNFNDYYDPSLKRARRALLERSGIFIVEGDINDVELLRKLFKIVSFTHVMHLAAQAGVRYAMENPSSYVHSNIAGFVNLL 206          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GAE6_ARATH (UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thaliana GN=GAE6 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.991e-50
Identity = 109/208 (52.40%), Postives = 137/208 (65.87%), Query Frame = 2
Query:  179 KIERSNTMNRQFH--RCFTSTSTMFLWALFLVALT-------------------ASYLSFQSFVDSG---SRYFSASWGGIQWEKHVRSSAQIHRSGGMSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            K+ER N+  R+ H  +   ++S +   A  LVAL                    A +L  +SF+ +G   S   S+S GG  WEK VR S+   R  G+SVLVTGAAGFVG+H SLAL+KRGDGV+G DNFN+YYDPSLK+AR+ LL    +F++EGD+ND  LL KLFD V FTH++HLAAQAGVRYAM+NP SY+ SNIAG V LL
Sbjct:   14 KLERYNSYLRKIHSTKVLNASSKVLFRATLLVALVLVLIFAINYPPLSDSRAAAAHHLHRRSFLSTGLFSSSSSSSSIGGAAWEKRVRQSSTAKRPHGLSVLVTGAAGFVGSHCSLALRKRGDGVLGFDNFNDYYDPSLKRARQELLEKQQVFIVEGDLNDGPLLRKLFDVVPFTHILHLAAQAGVRYAMKNPQSYIASNIAGFVNLL 221          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: YCL2_ECO11 (Uncharacterized 37.6 kDa protein in cld 5'region OS=Escherichia coli O111:H- PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 49/110 (44.55%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  LVTGAAGF+G HVS  L + G  VVG+DN N+YYD SLK+AR  LL   G    + D+ D + +  LF +  F  V     +  VRY+++NPH+Y  SN+ G + +L
Sbjct:    1 MKYLVTGAAGFIGFHVSKRLLEAGHQVVGIDNLNDYYDVSLKQARLELLAQPGFQFHKIDLADREGMTDLFASGHFERVFISPHRLAVRYSLENPHAYADSNLTGFLNIL 110          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: CAPI_STAAU (Protein capI OS=Staphylococcus aureus GN=capI PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.440e-16
Identity = 43/110 (39.09%), Postives = 70/110 (63.64%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M +L+TG AGF+G+H++  L K+G  V+G+D+ N+YY  SLK+ R   +        +  + +   L+K+F       V++LAAQAGVRY+++NP +Y+ SNI G + +L
Sbjct:    1 MKILITGTAGFIGSHLAKKLIKQGHYVIGVDSINDYYSVSLKEDRLKSIGKENFTFNKVKLENYDDLSKVFVDEQPEVVVNLAAQAGVRYSIENPRTYIDSNIVGFMNIL 110          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: Y1055_METJA (Uncharacterized protein MJ1055 OS=Methanocaldococcus jannaschii GN=MJ1055 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.148e-16
Identity = 45/111 (40.54%), Postives = 69/111 (62.16%), Query Frame = 2
Query:  404 SVLVTGAAGFVGTHVSLALKKRGDG--VVGLDNFNNYYDPSLKKARKALLNNHGIFV-IEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTL 727
            ++LVTG+AGF+G H+S  L    +   V+G+DN NNYY+P LK+ R  +L N+  +  I+ D +D   L +         ++HL AQAGVRY++QNP +Y+ SN  G + +
Sbjct:    5 NILVTGSAGFIGFHLSKYLMDNYEDLKVIGIDNLNNYYNPVLKEKRNEILKNYENYTFIKLDFSDWDDLVENLKDKEIDLIVHLGAQAGVRYSLQNPWAYIKSNEMGTLNI 115          
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: LPSL_RHIME (UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti GN=lspL PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.219e-15
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = 2
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALL-NNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            M  L+TG AGF+G HV+  L   G  VVG D    YYD +LK+ R A+L  ++G   +   + D   L +  +      ++HLAAQAGVRY+++NP +YV +N+ G   +L
Sbjct:    1 MRYLITGTAGFIGFHVAKRLIDEGHFVVGFDGMTPYYDVTLKERRHAILQRSNGFKAVTAMLEDRAALDRAAELAEPEVIIHLAAQAGVRYSLENPKAYVDANLVGSWNML 111          
The following BLAST results are available for this feature:
BLAST of CF834677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GAE1_ARATH1.838e-9685.50UDP-glucuronate 4-epimerase 1 OS=Arabidopsis thali... [more]
GAE5_ARATH1.288e-5757.69UDP-glucuronate 4-epimerase 5 OS=Arabidopsis thali... [more]
GAE3_ARATH2.868e-5760.10UDP-glucuronate 4-epimerase 3 OS=Arabidopsis thali... [more]
GAE2_ARATH8.346e-5759.11UDP-glucuronate 4-epimerase 2 OS=Arabidopsis thali... [more]
GAE4_ARATH4.142e-5657.69UDP-glucuronate 4-epimerase 4 OS=Arabidopsis thali... [more]
GAE6_ARATH1.991e-5052.40UDP-glucuronate 4-epimerase 6 OS=Arabidopsis thali... [more]
YCL2_ECO112.010e-1844.55Uncharacterized 37.6 kDa protein in cld 5'region O... [more]
CAPI_STAAU1.440e-1639.09Protein capI OS=Staphylococcus aureus GN=capI PE=3... [more]
Y1055_METJA7.148e-1640.54Uncharacterized protein MJ1055 OS=Methanocaldococc... [more]
LPSL_RHIME1.219e-1539.64UDP-glucuronate 5'-epimerase OS=Rhizobium meliloti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834677 ID=CF834677; Name=CF834677; organism=Citrus sinensis; type=EST; length=732bp
CATCTATTACTTCTCTTACCATTTCAATCCAATCCAAAACCAAATCCAAC
CCGGTTTCACCTTTCCTTCTAAACAAACAAACCAACCCAGAAAAGGGAAA
ATAATAAAGATTCGAAGATTCTAGAGAAAAATGCCGTCTTTAGAAGATGA
GCTGTTCCCGTCGACGCCGGGGAAATTCAAGATTGAAAGATCCAACACTA
TGAACCGCCAGTTTCACCGGTGTTTCACCTCAACGAGTACCATGTTCTTG
TGGGCTCTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGAGTTTTCAGTC
TTTTGTCGATTCCGGTAGCCGGTACTTTTCCGCTTCTTGGGGAGGTATCC
AGTGGGAGAAACATGTCAGGAGCTCCGCTCAGATCCATCGGTCTGGTGGG
ATGTCGGTGCTGGTTACCGGTGCAGCCGGTTTCGTTGGGACCCACGTGTC
TTTGGCTTTAAAGAAACGCGGAGACGGCGTCGTTGGACTCGACAATTTCA
ATAACTACTACGATCCCTCATTGAAGAAGGCGAGGAAGGCTTTGTTGAAC
AACCATGGCATTTTTGTAATTGAAGGTGATATCAATGACGCGAAATTATT
AGCCAAGCTCTTTGACGCTGTGGCTTTTACGCACGTGATGCATTTAGCGG
CTCAAGCCGGTGTTAGATACGCGATGCAGAATCCCCACTCGTACGTGCAC
AGCAATATCGCTGGCCTCGTCACGCTCCTTGA
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