CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1478..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_VITVI (Photosystem I assembly protein ycf3 OS=Vitis vinifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_TOBAC (Photosystem I assembly protein ycf3 OS=Nicotiana tabacum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SPIOL (Photosystem I assembly protein ycf3 OS=Spinacia oleracea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   40 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 114          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SOYBN (Photosystem I assembly protein ycf3 OS=Glycine max GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SOLTU (Photosystem I assembly protein ycf3 OS=Solanum tuberosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SOLLC (Photosystem I assembly protein ycf3 OS=Solanum lycopersicum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SOLBU (Photosystem I assembly protein ycf3 OS=Solanum bulbocastanum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SINAL (Photosystem I assembly protein ycf3 OS=Sinapis alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_POPTR (Photosystem I assembly protein ycf3 OS=Populus trichocarpa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_POPAL (Photosystem I assembly protein ycf3 OS=Populus alba GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.095e-38
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_VITVI1.095e-38100.00Photosystem I assembly protein ycf3 OS=Vitis vinif... [more]
YCF3_TOBAC1.095e-38100.00Photosystem I assembly protein ycf3 OS=Nicotiana t... [more]
YCF3_SPIOL1.095e-38100.00Photosystem I assembly protein ycf3 OS=Spinacia ol... [more]
YCF3_SOYBN1.095e-38100.00Photosystem I assembly protein ycf3 OS=Glycine max... [more]
YCF3_SOLTU1.095e-38100.00Photosystem I assembly protein ycf3 OS=Solanum tub... [more]
YCF3_SOLLC1.095e-38100.00Photosystem I assembly protein ycf3 OS=Solanum lyc... [more]
YCF3_SOLBU1.095e-38100.00Photosystem I assembly protein ycf3 OS=Solanum bul... [more]
YCF3_SINAL1.095e-38100.00Photosystem I assembly protein ycf3 OS=Sinapis alb... [more]
YCF3_POPTR1.095e-38100.00Photosystem I assembly protein ycf3 OS=Populus tri... [more]
YCF3_POPAL1.095e-38100.00Photosystem I assembly protein ycf3 OS=Populus alb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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