CF834729

Overview
NameCF834729
Unique NameCF834729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6272 contig Csv1_Contig6272:293..1002. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PR2E1_ORYSJ (Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-1 PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 3.824e-67
Identity = 127/169 (75.15%), Postives = 147/169 (86.98%), Query Frame = 3
Query:   12 ATPVSAAISVGH*LPDATLSYFDSAV-ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            + P +A I+VG  LPDATLSYFDS   EL+T+TV DLT+ KK +LFAVPGAFTPTC+QKH+PGFV K+ EL++KGVD VAC+SVNDAFVM+AWKE+LG+ DEVLLLSDGNG   +A+G ELDLSDKP GLGVRSRRYALLAE+GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   64 SAPAAATIAVGDKLPDATLSYFDSPDGELKTVTVRDLTAGKKVVLFAVPGAFTPTCTQKHVPGFVAKAGELRAKGVDAVACVSVNDAFVMRAWKESLGVGDEVLLLSDGNGELARAMGVELDLSDKPAGLGVRSRRYALLAEDGVVKVLNLEEGGAFTTSSAEEMLKAL 232          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2E_ARATH (Peroxiredoxin-2E, chloroplastic OS=Arabidopsis thaliana GN=PRXIIE PE=1 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 4.994e-67
Identity = 126/168 (75.00%), Postives = 149/168 (88.69%), Query Frame = 3
Query:   15 TPVSAAISVGH*LPDATLSYFD-SAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            TPV+A+ISVG  LPD+TLSY D S  +++T+TVS LT+ KK ILFAVPGAFTPTCSQKH+PGFV K+ EL+SKG+D +ACISVNDAFVM+AW+++LGINDEV+LLSDGNG FT  +G ELDL DKP+GLGVRSRRYA+LA++GVVKVLNLEEGGAFT S AEDMLKAL
Sbjct:   67 TPVTASISVGDKLPDSTLSYLDPSTGDVKTVTVSSLTAGKKTILFAVPGAFTPTCSQKHVPGFVSKAGELRSKGIDVIACISVNDAFVMEAWRKDLGINDEVMLLSDGNGEFTGKLGVELDLRDKPVGLGVRSRRYAILADDGVVKVLNLEEGGAFTNSSAEDMLKAL 234          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PR2E2_ORYSJ (Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa subsp. japonica GN=PRXIIE-2 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.740e-65
Identity = 126/170 (74.12%), Postives = 150/170 (88.24%), Query Frame = 3
Query:   12 ATPVSAAISVGH*LPDATLSYFDSAV-ELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGIND-EVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            A+ V A I+VG  LPDATLSYFD A  EL+T+TV++LT+ +KA+LFAVPGAFTPTCSQKHLPGF+EK+ EL +KGVD +AC+SVNDAFVM+AWKE+LG+ D +VLLLSDGN   T+A+G E+DLSDKPMGLGVRSRRYALLA++GVVKVLNLEEGGAFT S AE+MLKAL
Sbjct:   56 ASTVVATIAVGDKLPDATLSYFDPADGELKTVTVAELTAGRKAVLFAVPGAFTPTCSQKHLPGFIEKAGELHAKGVDAIACVSVNDAFVMRAWKESLGLGDADVLLLSDGNLELTRALGVEMDLSDKPMGLGVRSRRYALLADDGVVKVLNLEEGGAFTTSSAEEMLKAL 225          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2B_ARATH (Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.497e-47
Identity = 95/163 (58.28%), Postives = 118/163 (72.39%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            A I+VG  +PD T+S+FD   +LQT +V  L + KK ILF VPGAFTPTCS KH+PGF+EK+ ELKSKGVD + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLGVRSRR+ALL ++  V V N+E GG FT S A+D+LKAL
Sbjct:    2 APIAVGDVVPDGTISFFDENDQLQTASVHSLAAGKKVILFGVPGAFTPTCSMKHVPGFIEKAEELKSKGVDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGVRSRRFALLLDDLKVTVANVESGGEFTVSSADDILKAL 162          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2C_ORYSJ (Peroxiredoxin-2C OS=Oryza sativa subsp. japonica GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.279e-46
Identity = 92/163 (56.44%), Postives = 121/163 (74.23%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            A ++VG  LPD  L +FD   +LQ ++V  L + KK +LF VPGAFTPTCS +H+PGF+ ++ +LK+KGVD +  +SVND FVMKAW ++   N  V  L+DG G +TKA+G ELDLS+K  GLG+RSRR+ALLA+N  V V N+EEGG FT SGAE++LKAL
Sbjct:    2 APVAVGDTLPDGQLGWFDGEDKLQQVSVHGLAAGKKVVLFGVPGAFTPTCSNQHVPGFINQAEQLKAKGVDDILLVSVNDPFVMKAWAKSYPENKHVKFLADGLGTYTKALGLELDLSEK--GLGIRSRRFALLADNLKVTVANIEEGGQFTISGAEEILKAL 162          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2D_ARATH (Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID PE=1 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 92/163 (56.44%), Postives = 117/163 (71.78%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            A I+VG  +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:    2 APITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYQENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVENGGEFTVSSAEDILKAL 162          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2C_ARATH (Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.181e-46
Identity = 92/163 (56.44%), Postives = 117/163 (71.78%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGGAFTFSGAEDMLKAL 515
            A I+VG  +PD T+S+FD   +LQT++V  + + KK ILF VPGAFTPTCS  H+PGF+ K+ ELKSKG+D + C SVND FVMKAW +    N  V  ++DG+G +T  +G ELDL DK  GLG+RSRR+ALL +N  V V N+E GG FT S AED+LKAL
Sbjct:    2 APITVGDVVPDGTISFFDENDQLQTVSVHSIAAGKKVILFGVPGAFTPTCSMSHVPGFIGKAEELKSKGIDEIICFSVNDPFVMKAWGKTYPENKHVKFVADGSGEYTHLLGLELDLKDK--GLGIRSRRFALLLDNLKVTVANVESGGEFTVSSAEDILKAL 162          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX2A_ARATH (Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 72/149 (48.32%), Postives = 99/149 (66.44%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLEEGG 473
            A I VG  +PD ++S+FD   +LQT++V  L + KK ILF VPGAF PTCS  H+ GF+EK+ ELKS GVD + C+S +D F++ A  E    N  V  + DG+G + + +G EL++ DK  GLGVRSR +ALL +N  V V+N+  GG
Sbjct:    2 APIDVGDFVPDGSISFFDDDDQLQTVSVHSLAAGKKVILFGVPGAFPPTCSMNHVNGFIEKAEELKSNGVDEIICLSGDDPFMITACSE----NKHVKFVEDGSGEYIQLLGLELEVKDK--GLGVRSRGFALLLDNLKVIVVNVGSGG 144          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRX5_HAEIN (Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI0572 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.123e-25
Identity = 63/141 (44.68%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  102 ITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNL---EEGGAFTFSGAEDMLKAL 515
            +T S+L  NK  I+F++PGAFTPTCS  HLP + E +   K  GVD +  +SVND FVM AWKE+   ++ +  + DGNG FT+ +G  +   D  +G G RS RY++L +NGVV+ + +   E G  F  S A+ MLK L
Sbjct:   25 VTTSELFDNKTVIVFSLPGAFTPTCSSSHLPRYNELAPVFKKYGVDDILVVSVNDTFVMNAWKED-EKSENISFIPDGNGEFTEGMGMLVGKED--LGFGKRSWRYSMLVKNGVVEKMFIEPNEPGDPFKVSDADTMLKYL 162          
BLAST of CF834729 vs. ExPASy Swiss-Prot
Match: PRDX5_MOUSE (Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=Prdx5 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = 3
Query:   27 AAISVGH*LPDATLSYFDSAVELQTITVSDLTSNKKAILFAVPGAFTPTCSQKHLPGFVEKSAELKSKGVDTVACISVNDAFVMKAWKENLGINDEVLLLSDGNGVFTKAIGCELDLSDKPMGLGVRSRRYALLAENGVVKVLNLE-EGGAFTFSGAEDMLKAL 515
            A I VG  +P   +   +     + + +++L   KK +LF VPGAFTP CS+ HLPGFVE++  LK+KG   VAC+SVND FV++ W        +V LL+D  G F KA    LD S   +    R +R++++ +NG+VK LN+E +G   T S A ++L  L
Sbjct:   50 APIKVGDAIPSVEVFEGEPG---KKVNLAELFKGKKGVLFGVPGAFTPGCSKTHLPGFVEQAGALKAKGAQVVACLSVNDVFVIEEWGRAHQAEGKVRLLADPTGAFGKATDLLLDDSLVSLFGNRRLKRFSMVIDNGIVKALNVEPDGTGLTCSLAPNILSQL 210          
The following BLAST results are available for this feature:
BLAST of CF834729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
PR2E1_ORYSJ3.824e-6775.15Peroxiredoxin-2E-1, chloroplastic OS=Oryza sativa ... [more]
PRX2E_ARATH4.994e-6775.00Peroxiredoxin-2E, chloroplastic OS=Arabidopsis tha... [more]
PR2E2_ORYSJ2.740e-6574.12Peroxiredoxin-2E-2, chloroplastic OS=Oryza sativa ... [more]
PRX2B_ARATH7.497e-4758.28Peroxiredoxin-2B OS=Arabidopsis thaliana GN=PRXIIB... [more]
PRX2C_ORYSJ1.279e-4656.44Peroxiredoxin-2C OS=Oryza sativa subsp. japonica G... [more]
PRX2D_ARATH2.181e-4656.44Peroxiredoxin-2D OS=Arabidopsis thaliana GN=PRXIID... [more]
PRX2C_ARATH2.181e-4656.44Peroxiredoxin-2C OS=Arabidopsis thaliana GN=PRXIIC... [more]
PRX2A_ARATH6.812e-3248.32Peroxiredoxin-2A OS=Arabidopsis thaliana GN=PRXIIA... [more]
PRX5_HAEIN2.123e-2544.68Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influen... [more]
PRDX5_MOUSE4.729e-2540.24Peroxiredoxin-5, mitochondrial OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834729 ID=CF834729; Name=CF834729; organism=Citrus sinensis; type=EST; length=710bp
CTCTCCACCAAGCCACGCCAGTCTCCGCCGCCATTTCCGTGGGCCATTAA
CTCCCCGACGCCACCCTCTCCTACTTCGACTCCGCCGTCGAGCTCCAGAC
CATCACCGTCTCCGACCTCACCTCCAATAAAAAAGCAATCCTATTCGCCG
TCCCCGGCGCCTTCACCCCCACCTGCTCCCAAAAACACCTCCCGGGCTTC
GTCGAGAAATCCGCCGAGTTGAAATCCAAAGGCGTCGACACTGTCGCCTG
CATTTCCGTGAACGACGCCTTCGTTATGAAGGCCTGGAAGGAGAATCTTG
GAATCAACGATGAAGTGCTTTTGTTGTCTGATGGGAACGGGGTGTTCACT
AAGGCTATTGGCTGTGAGCTCGACTTGAGTGACAAGCCCATGGGATTGGG
AGTTAGGTCCAGGAGGTACGCCCTTTTGGCAGAAAACGGCGTCGTTAAGG
TGCTCAATTTGGAGGAGGGCGGCGCCTTTACTTTCAGCGGAGCTGAGGAC
ATGCTCAAAGCTCTGTGATTTCGGTGAGATAGTTTTTTTTTTTTTAATAA
TTTAACTTTCATTAGAGTGTTGAATAATGTGTCTTTGTTACTAAAAACTC
GTGTTTCGGGTTTTGAAATTTCTACTTCTCCTTGTGCATTTGAATTTTCA
GAGCTGTTTGGATTTTTATCCTGCTCAATTTAATTTTTTATCCCAAAAAA
AAAAAAAAAA
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