CF834734

Overview
NameCF834734
Unique NameCF834734
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1080 contig Csv1_Contig1080:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_CHICK (UPF0414 transmembrane protein C20orf30 homolog OS=Gallus gallus GN=RCJMB04_6c24 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LAV L + GTF II G ++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALAVVLFMIGTFLIIIGALLLAGYISKGGTDRAIPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_RAT (UPF0414 transmembrane protein C20orf30 homolog OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LA  L + GTF II G+++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_MOUSE (UPF0414 transmembrane protein C20orf30 homolog OS=Mus musculus PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 36/77 (46.75%), Postives = 52/77 (67.53%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LA  L + GTF II G+++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGTFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_PONAB (UPF0414 transmembrane protein C20orf30 homolog OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LA  L + G F II G+++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATGLFLIGAFLIIIGSLLLSGYISKGGADRAIPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_HUMAN (UPF0414 transmembrane protein C20orf30 OS=Homo sapiens GN=C20orf30 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LA  L + G F II G+++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGAFLIIIGSLLLSGYISKGGADRAVPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
BLAST of CF834734 vs. ExPASy Swiss-Prot
Match: CT030_BOVIN (UPF0414 transmembrane protein C20orf30 homolog OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.662e-11
Identity = 35/77 (45.45%), Postives = 51/77 (66.23%), Query Frame = 1
Query:  208 PIKEIVLAVSLLVFGTFGIICGTIMAYNRV---GGDRAHGVFFAVLGAILFIPGFYYTRIAYYAYKGYKGFSFNNIP 429
            P K I LA  L + G F II G+++    +   G DRA  V   ++G ++F+PGFY+ RIAYYA KGY+G+S+++IP
Sbjct:   42 PYKAIALATVLFLIGAFLIIIGSLLLAGYISKGGADRAVPVL--IIGILVFLPGFYHLRIAYYASKGYRGYSYDDIP 116          
The following BLAST results are available for this feature:
BLAST of CF834734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CT030_CHICK3.349e-1248.05UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_RAT4.375e-1246.75UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_MOUSE4.375e-1246.75UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_PONAB9.746e-1245.45UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
CT030_HUMAN1.662e-1145.45UPF0414 transmembrane protein C20orf30 OS=Homo sap... [more]
CT030_BOVIN1.662e-1145.45UPF0414 transmembrane protein C20orf30 homolog OS=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834734 ID=CF834734; Name=CF834734; organism=Citrus sinensis; type=EST; length=602bp
GAAAAGTCTCGCGCTTTGAGAACTAGAAAACTCCAACGCAAGGCACGCAA
GCAGCCAAACCCTAGACAAGAATCAAAACCTCCCACTATACGAAAAAATC
CGAAATTGGAATTCACGAATCGAACAATGGCGTACGTGGACCACGCTTTC
TCGATATCCGACGAGGACATAATGATGGAGACATCATACACCGTCAACAA
TCGGCCTCCGATCAAAGAGATCGTCCTTGCCGTTTCTCTCCTCGTTTTCG
GCACTTTCGGCATCATCTGCGGCACCATCATGGCCTACAACAGAGTCGGC
GGTGACCGCGCTCACGGGGTTTTCTTTGCAGTACTGGGCGCGATTCTGTT
TATACCGGGATTTTATTATACACGAATTGCGTATTATGCGTACAAGGGAT
ACAAAGGCTTTTCTTTCAATAATATACCTTCTGTTTGAGCTGATCTCTTA
CTCAATGTACAGATCTCCCCACAAGTTGTACTTTGTCTTTTTTTTTTTTT
TTGGGAATATTGATTTTTATTTTTGTTTGAATAATATTTGTGTATATTGG
TTACTAATATTGTGAACAAGGTGCGGTTATATAGTGAAAAAAAAAAAAAA
AA
back to top