CF834759

Overview
NameCF834759
Unique NameCF834759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8375 contig Csv1_Contig8375:544..1237. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834759 vs. ExPASy Swiss-Prot
Match: CCR4A_ARATH (Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 1.099e-79
Identity = 149/226 (65.93%), Postives = 173/226 (76.55%), Query Frame = 1
Query:   25 MLSVLRPHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPVDGHFLKYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXXXXXXXLFGRFNTTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSP 693
            MLSV+R HLPS+IPIVGCELTPYVLLRRPD   +T+DVPESAP++GHFLKY+W+R+QSD+KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA             R N++GSG                     +YP+A+T+   +GGET  EVGRSKTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSP
Sbjct:    1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGNDEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRSKTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSP 219          
BLAST of CF834759 vs. ExPASy Swiss-Prot
Match: CCR4B_ARATH (Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2)

HSP 1 Score: 280.026 bits (715), Expect = 8.153e-75
Identity = 138/225 (61.33%), Postives = 166/225 (73.78%), Query Frame = 1
Query:   25 MLSVLRPHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPVDGHFLKYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXXXXXXXLFGRFNTTGSG-VINXXXXXXXXXXXXXXXXXPLYPAAVT-RSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSP 693
            MLSV+R HLPS+IPIVGCELTPYVL+RRPD   TT+DVPESAP++G+FL+Y+WYR+QSD+KV +CSVHP+EQATLQC+ C K +  V KSYHCSPKCF+DAWQHHR LH+RAA+              R N+ GSG +                   P YP+ +T ++GGET  EVG  KTYTP+ADDI HVLKFECVV +AETK  VGHP+T+LTSRVIPAPSP
Sbjct:    1 MLSVIRVHLPSEIPIVGCELTPYVLVRRPDKNSTTDDVPESAPLEGYFLRYRWYRVQSDKKVTICSVHPTEQATLQCVFCSKRRSLVPKSYHCSPKCFTDAWQHHRTLHERAAAENNANEDDD---LNRNNSAGSGSLAGSLSGSMSNLSIANNGPAPFYPSNITQKNGGETLVEVGGCKTYTPTADDISHVLKFECVVANAETKQIVGHPSTILTSRVIPAPSP 222          
The following BLAST results are available for this feature:
BLAST of CF834759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCR4A_ARATH1.099e-7965.93Carbon catabolite repressor protein 4 homolog 1 OS... [more]
CCR4B_ARATH8.153e-7561.33Carbon catabolite repressor protein 4 homolog 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834759 ID=CF834759; Name=CF834759; organism=Citrus sinensis; type=EST; length=694bp
GCCGTTTGAAACATATAAAGAAGCATGCTGAGTGTGCTGCGCCCGCACCT
TCCGTCGGATATTCCTATTGTAGGCTGTGAACTCACGCCGTACGTGCTCT
TACGGCGCCCCGATAATGCTGTCACCACCGAAGATGTCCCCGAGTCGGCC
CCAGTGGATGGTCATTTCTTGAAATACAAGTGGTATCGTATACAAAGTGA
TAGAAAAGTTGCTGTATGTAGCGTACATCCTTCTGAGCAAGCCACTCTGC
AGTGTCTAGGTTGTGTTAAGGCTAAAATACCTGTTGCCAAAAGTTACCAT
TGCTCACCAAAGTGCTTCTCTGATGCATGGCAGCATCATCGTGTTCTTCA
CGATCGTGCTGCAAGTGCTGTAGGTGAGAATGGGAATGAAGAGGAGGAGT
TGTTTGGCCGTTTCAATACCACTGGATCTGGAGTTATCAATGCTAGTTTA
TCTGGTTCTGCCTCAAATTCTAGCCTGACGAATGGTTCAACACCTTTATA
TCCTGCTGCAGTTACGCGGAGTGGAGGTGAAACTTGGTTTGAAGTTGGAC
GATCAAAAACATACACTCCATCAGCCGATGATATTGGCCATGTCCTGAAG
TTTGAGTGTGTCGTAGTAGATGCAGAAACCAAACTCCCCGTGGGGCATCC
CAACACTCTGTTGACTTCCCGAGTCATTCCTGCCCCTTCTCCTA
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