CF834762

Overview
NameCF834762
Unique NameCF834762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12479 contig Csv1_Contig12479:1458..2174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834762 vs. ExPASy Swiss-Prot
Match: TT12_ARATH (Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.084e-19
Identity = 40/73 (54.79%), Postives = 56/73 (76.71%), Query Frame = -3
Query:  497 GAGWQSIVAYVNIAWYYLIGIPIGVVLGYLTHLEVKGVWTGMLIGTFVQTVVLIIITLKTDWDKQVMKARERV 715
            G+GWQ++VAYVN+  YY+IG+PIG VLG+ T L V G+W GM+ G  +QT+ LI++TLKT+W  +V  A +RV
Sbjct:  420 GSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQTLTLIVLTLKTNWTSEVENAAQRV 492          
The following BLAST results are available for this feature:
BLAST of CF834762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TT12_ARATH5.084e-1954.79Protein TRANSPARENT TESTA 12 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834762 ID=CF834762; Name=CF834762; organism=Citrus sinensis; type=EST; length=717bp
TTTTTTTTTTTTTTAATTTGATGACACAAGCAATTATTCTTTACTAATCA
CGCTAGGATATAAACTATTGTACACACTCTATTTACAAAACTAATGCATG
AGTATGAACACTGTATTAAGTGAGCACATGCTCATTTTCTACAGCTATCT
AATGAACAAATCCGAAATTTATCATGTCCAATGCTACAATTAAAGCCAAT
ACGAATGAATCTCACAATGGTGATGTTGAAACACCAAAAACAGGAAAAAA
AAAAAAAATTCCACTTTTTGATTCTCCATCTACATGAGCAATGTAGTTGA
ACATCAAGTCCCATGAGGCAGATTGAATGCTTGATTGTACTCTTGAGAGC
AAAAACAAAACTGTAAGCAATTAATTGGCAGGAGCTTTACACCAAGCAAA
ACAGATTTTGGAAATTGAAGAAGTTTGATGTCAAGCTGCGACATCTGCTT
GTTCGTTAGGCGATTGTTCCGGTGATTCGGGAATGAACCACTTGTTCACG
CGTTCGCGAGCCTTCATCACCTGTTTGTCCCAGTCCGTTTTCAAAGTGAT
GATGATAAGAACTACAGTTTGAACAAAAGTTCCAATCAACATTCCGGTCC
AAACACCTTTGACTTCCAAATGGGTTAAATAACCAAGCACGACTCCAATA
GGAATCCCAATCAGGTAGTACCAAGCGATGTTAACATACGCTACGATACT
CTGCCATCCAGCCCCCA
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