CF834783

Overview
NameCF834783
Unique NameCF834783
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834783 vs. ExPASy Swiss-Prot
Match: SOT1_SPIOL (2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.562e-30
Identity = 55/65 (84.62%), Postives = 62/65 (95.38%), Query Frame = -1 
Query:  408 AMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 602
            A+VL+F SNLMGGLTHYGIGSAPVFYGANYVPL +WWGYGF++SIVN+IIWLGVGG+WWK IGLW
Sbjct:  505 AIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWKAIGLW 569
[Close]
BLAST of CF834783 vs. ExPASy Swiss-Prot
Match: YFLS_BACSU (Putative malate transporter yflS OS=Bacillus subtilis GN=yflS PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.663e-22
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = -1 
Query:  408 AMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWKFIGLW 602
            A+ LAF SNL G  THYG G+APVF+GA Y+P  KWW  GFI+SIV+II+WL +GG+WWK +G+W
Sbjct:  414 ALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWKVLGIW 478
The following BLAST results are available for this feature:
BLAST of CF834783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SOT1_SPIOL3.562e-3084.622-oxoglutarate/malate translocator, chloroplastic ... [more]
YFLS_BACSU4.663e-2263.08Putative malate transporter yflS OS=Bacillus subti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06B20_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834783 ID=CF834783; Name=CF834783; organism=Citrus sinensis; type=EST; length=602bp
GCCCCCCGAGTTTTTTTTTTTTTTTTCAGGAGTAAATTCGGAAGATGTAA
ATTCCAACTTTTAAATTTAAGAACAACCTAATCCATCAAAGAGACCAACC
CTTTAAAAAAACAAGTAAGGTTGCAAAAATACAAGCGATATTCAGGCATC
AAACTGAACTAATCACTAATCAATAATCGGAAGGTAGTTTTTTTGCGGCG
TCAAAATTTCAGATACAAACCTACTTCCCGCTCTAAATAAATAGACCTCA
TATAGATCTATACCGTTTTCTCCAATCAAGGTCTCCACCAAATAATTATT
TCTATGGTAAAGAATCAATAAGAAAAGTTACCCGCCAGTTGGAAAACTAA
CCTGCAGGCCAACAATAATCAGAAAAACTGCAATTTTTTTATGTAACAGC
CTCTTTACCACAAACCAATGAATTTCCACCAAACACCACCAACTCCAAGC
CAGATAATGATGTTGACGATAGATACGATGAATCCGTATCCCCACCATTT
GGCAAGGGGAACGTAGTTGGCACCATAGAAAACAGGTGCTGACCCGATGC
CATAGTGGGTGAGACCACCCATGAGATTGGAAAAGAAGGCGAGCACCATG
GC
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