CF834784

Overview
NameCF834784
Unique NameCF834784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1083 contig Csv1_Contig1083:1..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: SOT1_SPIOL (2-oxoglutarate/malate translocator, chloroplastic OS=Spinacia oleracea GN=SODIT1 PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 1.671e-98
Identity = 165/193 (85.49%), Postives = 181/193 (93.78%), Query Frame = 2
Query:    2 LLLPLRLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 580
            LLL + LWVFGG+L VD VTAAILGLS+LL+TGVVTWKECL ESVAWDTLTWFAALIAMAGYLNKYGLITWFS+ VVK VGGLGLSWQ+SFG+L+LLYFYSHYFFASGAAHIGAMFTAFLSVASALG PP+  A+VL+F SNLMGGLTHYGIGSAPVFYGANYVPL +WWGYGF++SIVN+IIWLGVGG+WWK
Sbjct:  372 LLLTVGLWVFGGKLGVDAVTAAILGLSVLLITGVVTWKECLAESVAWDTLTWFAALIAMAGYLNKYGLITWFSENVVKVVGGLGLSWQMSFGVLVLLYFYSHYFFASGAAHIGAMFTAFLSVASALGTPPFLAAIVLSFLSNLMGGLTHYGIGSAPVFYGANYVPLPQWWGYGFLISIVNLIIWLGVGGLWWK 564          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: YFLS_BACSU (Putative malate transporter yflS OS=Bacillus subtilis GN=yflS PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.745e-63
Identity = 107/192 (55.73%), Postives = 142/192 (73.96%), Query Frame = 2
Query:    5 LLPLRLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 580
            LL L LW+FGG  N+D  T A++GL++LL++ V+TW +   E  AWDTLTWFAAL+ +A +LN+ G+++WFS  +   V G   SW ++F ILI++Y+YSHYFFAS  AHI AM++AFL+V  A G PP   A+ LAF SNL G  THYG G+APVF+GA Y+P  KWW  GFI+SIV+II+WL +GG+WWK
Sbjct:  284 LLVLVLWIFGGSFNIDATTTALIGLAVLLLSQVLTWDDIKKEQGAWDTLTWFAALVMLANFLNELGMVSWFSNAMKSSVSGF--SWIVAFIILIVVYYYSHYFFASATAHISAMYSAFLAVVVAAGAPPLLAALSLAFISNLFGSTTHYGSGAAPVFFGAGYIPQGKWWSIGFILSIVHIIVWLVIGGLWWK 473          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: Y020_HAEIN (Uncharacterized transporter HI0020 OS=Haemophilus influenzae GN=HI0020 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.947e-30
Identity = 62/189 (32.80%), Postives = 101/189 (53.44%), Query Frame = 2
Query:   23 WVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQT---VVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWWK 580
            W+F   L+++    AI+ + + +V  +VTW + L    AW+TL W+  +I M+G L K G   W + T   +++F G       ++  +++ L     Y FASG A++ AM   F +V    G P   +A+ L F ++  G +THYG G  P+ +GA Y  +  WW  G I++  ++II L +G  WWK
Sbjct:  287 WIFSNSLHINATIVAIIVMVLCIVLSIVTWDDILKSKGAWNTLVWYGGIIGMSGLLEKSGFFKWLANTLSTILQFEG----HGMMALIVILTLSVSVRYLFASGGAYVAAMVPVFATVGHVTGAPTELLALGLVFANSYGGSVTHYGGGPGPIAFGAGYNDIKSWWITGAIIAFGSLIIHLTIGMAWWK 471          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: YBHI_ECOLI (Inner membrane protein ybhI OS=Escherichia coli (strain K12) GN=ybhI PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.069e-28
Identity = 60/191 (31.41%), Postives = 103/191 (53.93%), Query Frame = 2
Query:    5 LLPLRLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVWW 577
            +L L  W+F   L VD  T AI+ ++ +L+ G+VTW++ +     W+TL W+  +I ++  L+K     W ++     +   G    ++F ++I L     YFFASG+A+I AM   F  +A+  G P    A+ L F ++  G +THYG  + PV +G  Y  +  WW  G +++I+  ++ + +G  WW
Sbjct:  279 VLALLGWIFSKSLGVDESTVAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKNNLAFDGHG-NVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALALLFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWW 468          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: CITT_ECOLI (Citrate carrier OS=Escherichia coli (strain K12) GN=citT PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.646e-24
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 2
Query:    2 LLLPLRLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL-GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVG 565
            +LL L LWVFG  + ++     +L +S++L   VV WK+    + AW+TL   A L+ MA  L + G I WF+ T+   +   G S   +  +L+L+++++HY FAS +AH   M    L+V   + G P   + ++L     +MG LT Y  G   + YG  YV    +W  G I  ++ I + L VG
Sbjct:  294 VLLSLGLWVFGSEV-INATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLE--GFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG 479          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: CITT_ECO57 (Citrate carrier OS=Escherichia coli O157:H7 GN=citT PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.646e-24
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 2
Query:    2 LLLPLRLWVFGGRLNVDPVTAAILGLSILLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASAL-GCPPYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVG 565
            +LL L LWVFG  + ++     +L +S++L   VV WK+    + AW+TL   A L+ MA  L + G I WF+ T+   +   G S   +  +L+L+++++HY FAS +AH   M    L+V   + G P   + ++L     +MG LT Y  G   + YG  YV    +W  G I  ++ I + L VG
Sbjct:  294 VLLSLGLWVFGSEV-INATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLE--GFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVG 479          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_SHISS (L-tartrate/succinate antiporter OS=Shigella sonnei (strain Ss046) GN=ttdT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_SHIDS (L-tartrate/succinate antiporter OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ttdT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_SHIBS (L-tartrate/succinate antiporter OS=Shigella boydii serotype 4 (strain Sb227) GN=ttdT PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
BLAST of CF834784 vs. ExPASy Swiss-Prot
Match: TTDT_ECOLI (L-tartrate/succinate antiporter OS=Escherichia coli (strain K12) GN=ttdT PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.495e-22
Identity = 63/194 (32.47%), Postives = 105/194 (54.12%), Query Frame = 2
Query:   14 LRLWVFGGRLNVDPVTAAILGLSI---LLVTGVVTWKECLPESVAWDTLTWFAALIAMAGYLNKYGLITWFSQTVVKFVGGLGLSWQLSFGILILLYFYSHYFFASGAAHIGAMFTAFLSVASALGCP----PYFVAMVLAFFSNLMGGLTHYGIGSAPVFYGANYVPLAKWWGYGFIVSIVNIIIWLGVGGVW 574
            L LW+FGG    D + AA++G S+   +L+  +++W + +    AW+   W A+LI +A  LN  G I+WF + +   +   G S  +    LI++++   YFFAS  A+  A+  A + +A+AL  P    P F  MV A    L   LT Y  G +P++YG+ Y+P A +W  G I  ++ +++ +  G +W
Sbjct:  297 LVLWIFGG----DYIDAAMVGYSVVALMLLLRIISWDDIVSNKAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLS--GYSPTMVMVALIVVFYLLRYFFASATAYTSAL--APMMIAAALAMPEIPLPVFCLMVGAAI-GLGSILTPYATGPSPIYYGSGYLPTADYWRLGAIFGLIFLVLLVITGLLW 481          
The following BLAST results are available for this feature:
BLAST of CF834784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SOT1_SPIOL1.671e-9885.492-oxoglutarate/malate translocator, chloroplastic ... [more]
YFLS_BACSU1.745e-6355.73Putative malate transporter yflS OS=Bacillus subti... [more]
Y020_HAEIN1.947e-3032.80Uncharacterized transporter HI0020 OS=Haemophilus ... [more]
YBHI_ECOLI1.069e-2831.41Inner membrane protein ybhI OS=Escherichia coli (s... [more]
CITT_ECOLI4.646e-2433.33Citrate carrier OS=Escherichia coli (strain K12) G... [more]
CITT_ECO574.646e-2433.33Citrate carrier OS=Escherichia coli O157:H7 GN=cit... [more]
TTDT_SHISS1.495e-2232.47L-tartrate/succinate antiporter OS=Shigella sonnei... [more]
TTDT_SHIDS1.495e-2232.47L-tartrate/succinate antiporter OS=Shigella dysent... [more]
TTDT_SHIBS1.495e-2232.47L-tartrate/succinate antiporter OS=Shigella boydii... [more]
TTDT_ECOLI1.495e-2232.47L-tartrate/succinate antiporter OS=Escherichia col... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06B20_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834784 ID=CF834784; Name=CF834784; organism=Citrus sinensis; type=EST; length=585bp
TCTGCTTCTTCCTTTAAGGCTCTGGGTTTTTGGTGGTAGACTGAATGTGG
ACCCTGTTACTGCTGCAATTCTTGGATTGTCTATCCTCCTTGTCACTGGG
GTTGTGACTTGGAAGGAGTGCTTACCTGAATCCGTTGCTTGGGATACTCT
GACATGGTTTGCTGCTCTTATTGCTATGGCTGGATATCTCAACAAATACG
GTCTTATCACCTGGTTCAGCCAAACTGTGGTCAAGTTTGTTGGTGGATTG
GGTCTTTCATGGCAGCTATCTTTTGGCATTCTGATTCTTCTCTATTTCTA
CTCCCACTACTTCTTTGCAAGTGGAGCTGCTCACATCGGTGCCATGTTTA
CAGCCTTCTTATCTGTTGCTAGTGCTCTAGGCTGTCCACCATACTTTGTA
GCCATGGTGCTCGCCTTCTTTTCCAATCTCATGGGTGGTCTCACCCACTA
TGGCATCGGGTCAGCACCTGTTTTCTATGGTGCCAACTACGTTCCCCTTG
CCAAATGGTGGGGATACGGATTCATCGTATCTATCGTCAACATCATTATC
TGGCTTGGAGTTGGTGGTGTTTGGTGGAAATTCAT
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