CF834796

Overview
NameCF834796
Unique NameCF834796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 5.283e-71
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 266.929 bits (681), Expect = 6.900e-71
Identity = 133/135 (98.52%), Postives = 135/135 (100.00%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.008e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMR+RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELPSNVADLL
Sbjct:  279 ITQSVIFVNTRRKVDWLTDKMRTRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 2.008e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELP+NVADLL
Sbjct:  280 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 2.008e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELP+NVADLL
Sbjct:  280 ITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.841e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 263.848 bits (673), Expect = 5.841e-70
Identity = 132/135 (97.78%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERML DIQKFYNVVIEELP+NVADLL
Sbjct:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A2_ARATH (Eukaryotic initiation factor 4A-2 OS=Arabidopsis thaliana GN=TIF4A-2 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 7.629e-70
Identity = 131/135 (97.04%), Postives = 134/135 (99.26%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVT DD+RMLFDIQKFYNVV+EELPSNVADLL
Sbjct:  278 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTLDDQRMLFDIQKFYNVVVEELPSNVADLL 412
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.301e-69
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = -2 
Query:  279 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADLL 683
            ITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELP+NVADLL
Sbjct:  280 ITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414
[Close]
BLAST of CF834796 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.301e-69
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = -2 
Query:  282 ITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPSNVADL 683
            ITQSVIFVNTRRKVDWLTDKMR RDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELP+NVADL
Sbjct:  120 ITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253
The following BLAST results are available for this feature:
BLAST of CF834796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_ARATH5.283e-7198.52Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF414_TOBAC6.900e-7198.52Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A8_TOBAC2.008e-7097.78Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A3_ORYSJ2.008e-7097.78Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A1_ORYSJ2.008e-7097.78Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF4A2_NICPL5.841e-7097.78Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF410_TOBAC5.841e-7097.78Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]
IF4A2_ARATH7.629e-7097.04Eukaryotic initiation factor 4A-2 OS=Arabidopsis t... [more]
IF4A_WHEAT1.301e-6997.04Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A6_TOBAC1.301e-6997.01Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06C03_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834796 ID=CF834796; Name=CF834796; organism=Citrus sinensis; type=EST; length=684bp
AATTGATACGAAAGGACATAAAATACAAAGACCTCCCTTTAACAAAAATT
TCAATAATTATAAACCCACCACAGTGCCTCTTGCAAATGTGCATGACCCA
TATGATTAAATGGTCGGATATGTTTGAGAACAACATTAATTTAAGACACT
ATACGGAAAGGAAGAAGAAACCAAAAAAAAAAAAAAAGGGGAGAAAAGAA
CCACCACATTAAACAGTACTTGCAAAATCAGGAAACCCCTTCTTGCCTCG
ACAAACTTACAAAAACAGAACCTCCTCAAAGAAGGTCAGCAACGTTTGAA
GGCAGCTCCTCAATGACCACGTTATAGAACTTTTGAATATCAAAAAGCAT
TCTCTCATCATCCCTTGTCACAAAATTAATGGCAACACCCTTTCTTCCAA
ATCGACCACTTCGTCCAATACGGTGAAGGTAGTTTTCTGGTTGAGTCGGC
AGATCATAATTTATGACAAGTGAAACTTGCTGCACATCAATACCACGAGC
CAACAGATCAGTGGTGATGAGAACACGAGAAGAACCAGAGCGAAATTCAC
GCATAATGATATCTCGGGTGTTCTGATCCATGTCCCCATGAGTGGCAGAG
ACTGTATGGTCACGGCTTCGCATCTTGTCCGTAAGCCAGTCGACCTTTCG
CCGAGTGTTCACAAAGATGACACTCTGGGTTATG
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