CF834813

Overview
NameCF834813
Unique NameCF834813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12177 contig Csv1_Contig12177:12..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834813 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 58/185 (31.35%), Postives = 86/185 (46.49%), Query Frame = 2
Query:  155 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEA---------QNPNQNKL-PLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEHSWAALNWVASHVTGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCV*LAGVIMVHPFFGGTSPEE 676
            K+P + +P  GV S DV+I  +  + +R++ P +A         QNP   ++ P++ +  GG F   SA    Y   C        A+VVSV Y   P+   P  Y+  WA L WV S         WL    D   ++ + G S+GGNI H +A R     +    + G I+++P FGGT   E
Sbjct:   52 KVPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRID---VLGNILLNPMFGGTERTE 226          
BLAST of CF834813 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 57/187 (30.48%), Postives = 81/187 (43.32%), Query Frame = 2
Query:  155 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEAQNPNQNKL------------PLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEHSWAALNWVASHVTGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCV*LAGVIMVHPFFGGTSPEE 676
            K+  + +P  GV S DV+I     + +R++ P  A       +            P++ +  GG F   SA    Y   C         +VVSV Y   P+ P P  Y+  W ALNWV S         WL    D    + + G S+GGNIAH +A R G  G+    + G I+++P FGG    E
Sbjct:   52 KVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNS-------RSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGID---VLGNILLNPMFGGNERTE 228          
BLAST of CF834813 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.180e-16
Identity = 61/183 (33.33%), Postives = 83/183 (45.36%), Query Frame = 2
Query:  155 KIPPSDDPTTGVRSKDVVISPEPPVSARIFIPYEAQNPNQNK-------------LPLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEHSWAALNWVASHVTGNGPEPWLNDHADFG-KVLIGGASAGGNIAHTLAFRVGSIGLPCV*LAGVIMVHPFFGG 661
            K+P +  P  GV S D V S    ++ RI+ P    +  ++              +P+L +  GG F   SA    Y  FC         +VVSV+Y   P+   P  Y+  W ALNWV S V       WL    D    V + G S+GGNIAH +A R  + G   V + G I++HP FGG
Sbjct:   52 KVPANSFPLDGVFSFDHVDSTTNLLT-RIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKDSNVYVYLAGDSSGGNIAHNVAVRATNEG---VKVLGNILLHPMFGG 223          
BLAST of CF834813 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.284e-16
Identity = 55/194 (28.35%), Postives = 82/194 (42.27%), Query Frame = 2
Query:  155 KIPPSDDPTTGVRSKDVVISPEPPVSARIF-------------------IPYEAQNPNQNKLPLLFYLRGGGFCRQSAFGPRYHNFCSVFSAQANAIVVSVEYGNFPDRPIPACYEHSWAALNWVASHVTGNGPEPWLNDHADF-GKVLIGGASAGGNIAHTLAFRVGSIGLPCV*LAGVIMVHPFFGGTSPEE 676
            ++P +  P  GV S D +I     +  RI+                   + +    P     P++ +  GG F   SA    Y + C  F   +  +VVSV Y   P+   P  Y+  W AL WV S       +P++    D   +V + G S+GGNIAH +A R    G   V + G I+++  FGGT   E
Sbjct:   52 RVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADEG---VKVCGNILLNAMFGGTERTE 235          
The following BLAST results are available for this feature:
BLAST of CF834813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GI1L3_ARATH1.046e-1831.35Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.973e-1830.48Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH2.180e-1633.33Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ8.284e-1628.35Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06C14_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834813 ID=CF834813; Name=CF834813; organism=Citrus sinensis; type=EST; length=684bp
CACAAAGAACCCCTTTTGGCTTTCATTATTTTATTTCAAACCGAAGCTTC
ACACTTAAAAGGTGGAATCAAGCGACTCGGAAATTGCAAAAGAATTCCGA
TTCTTCCGGGTTTACAAAGACGGCCGGGTTGAGTTATTCGAACCCGACTG
CGAAAAGATCCCACCCTCCGATGACCCCACCACCGGCGTCCGATCCAAAG
ACGTTGTTATTTCGCCCGAACCACCCGTGTCTGCTCGTATCTTCATTCCG
TATGAAGCCCAAAACCCTAACCAGAATAAGCTCCCTCTCTTATTCTACTT
GCGTGGCGGTGGATTCTGCAGGCAGTCCGCCTTTGGTCCACGGTATCATA
ATTTCTGTAGCGTCTTTTCTGCACAAGCTAATGCTATAGTGGTGTCCGTA
GAATATGGGAATTTCCCGGATCGACCCATACCCGCTTGTTACGAACACTC
GTGGGCTGCACTCAACTGGGTGGCGTCCCATGTCACCGGAAATGGACCCG
AGCCATGGTTGAATGATCACGCTGATTTTGGGAAAGTTTTGATTGGAGGA
GCCAGCGCTGGAGGGAATATTGCACACACTCTGGCGTTTCGGGTCGGGTC
AATCGGGTTACCTTGTGTATAGTTGGCTGGGGTGATCATGGTGCATCCAT
TTTTCGGTGGCACTAGTCCTGAAGAACATGCGAC
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