CF834815

Overview
NameCF834815
Unique NameCF834815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD38_ARATH (LOB domain-containing protein 38 OS=Arabidopsis thaliana GN=LBD38 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 8.231e-50
Identity = 98/139 (70.50%), Postives = 111/139 (79.86%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPL---------APELDDVSESAVNCTN 490
            MSCNGCRVLRKGCSENC+LR  IQWI +P+AQ +ATVFVAKFFGRAGLMSFISAVPE+Q P+LFQSLLYEA GRTVNPV+GAVGLLWTGNWNVCQ+AVE VL GG+L+P+P  L         +P  D+ SE      N
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQSLLYEACGRTVNPVNGAVGLLWTGNWNVCQAAVETVLRGGSLKPIPELLNGGGFAGFPSPTSDEASEICTEMLN 139          
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD37_ARATH (LOB domain-containing protein 37 OS=Arabidopsis thaliana GN=LBD37 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.395e-49
Identity = 94/148 (63.51%), Postives = 111/148 (75.00%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL-------------PCPLAPELDDVSESAVNCTNNSPKD 505
            MSCNGCRVLRKGCSENC+LR  IQWI T  AQ +ATVFVAKFFGRAGLMSFISAVP++QRP+LFQSLLYEA GRTVNPV+GA+G+LWTGNWN+CQ+AVE VL GG+L+P+             P P + E  ++    +N   N   D
Sbjct:    1 MSCNGCRVLRKGCSENCILRPCIQWIETADAQGHATVFVAKFFGRAGLMSFISAVPDSQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNICQAAVETVLRGGSLRPIPELLTHGGGFAGFPSPTSEEASEICTEMLNLQQNDSTD 148          
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD39_ARATH (LOB domain-containing protein 39 OS=Arabidopsis thaliana GN=LBD39 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.041e-44
Identity = 83/110 (75.45%), Postives = 98/110 (89.09%), Query Frame = 2
Query:  101 MSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPL 430
            MSCNGCRVLRKGCSE C+LR  +QWI + ++Q +ATVFVAKFFGRAGLMSFIS+VPE QRP+LFQSLL+EA GRTVNPV+GAVG+LWT NW+VCQ+AVE VL GG L+P+
Sbjct:    1 MSCNGCRVLRKGCSETCILRPCLQWIESAESQGHATVFVAKFFGRAGLMSFISSVPELQRPALFQSLLFEACGRTVNPVNGAVGMLWTRNWHVCQAAVETVLRGGTLRPI 110          
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD40_ARATH (LOB domain-containing protein 40 OS=Arabidopsis thaliana GN=LBD40 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.720e-39
Identity = 71/117 (60.68%), Postives = 95/117 (81.20%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + MSCNGCRVLRKGCSENC +R  +QWI + ++QANATVF+AKF+GRAGLM+ ++  P+  RP++F+SLLYEA GR VNP+ G+VGLLW+GNW++CQ+AVE V+ G  + P+ C  A
Sbjct:    1 MRMSCNGCRVLRKGCSENCSIRPCLQWIKSAESQANATVFLAKFYGRAGLMNLLNTGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGNWHLCQAAVEAVMRGSPVTPIACDAA 117          
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD41_ARATH (LOB domain-containing protein 41 OS=Arabidopsis thaliana GN=LBD41 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.118e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCG 412
            + MSCNGCRVLRKGCSE+C +R  + WI +P+AQANATVF+AKF+GRAGLM+ I+A P   RP +F+SLL+EA GR VNP+ G+VGLLW+GNW +CQ AVE V+ G
Sbjct:    1 MRMSCNGCRVLRKGCSEDCSIRPCLAWIKSPEAQANATVFLAKFYGRAGLMNLINAGPNHLRPGIFRSLLHEACGRIVNPIYGSVGLLWSGNWQLCQDAVEAVMKG 106          
BLAST of CF834815 vs. ExPASy Swiss-Prot
Match: LBD42_ARATH (LOB domain-containing protein 42 OS=Arabidopsis thaliana GN=LBD42 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 66/117 (56.41%), Postives = 91/117 (77.78%), Query Frame = 2
Query:   95 INMSCNGCRVLRKGCSENCLLRQSIQWIGTPQAQANATVFVAKFFGRAGLMSFISAVPETQRPSLFQSLLYEAVGRTVNPVSGAVGLLWTGNWNVCQSAVERVLCGGALQPLPCPLA 445
            + +SCNGCRVLRKGC+++C +R  +QWI +  +QANAT+F+AKF+GRAGL++ I + P+  RP++F+SLLYEA GR VNPV G+VGL+W+GNW  CQ+AV+ VL G  +   P P A
Sbjct:    1 MRISCNGCRVLRKGCNQDCTIRPCLQWIKSADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQAAVDAVLNGLPITHTPLPSA 117          
The following BLAST results are available for this feature:
BLAST of CF834815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
LBD38_ARATH8.231e-5070.50LOB domain-containing protein 38 OS=Arabidopsis th... [more]
LBD37_ARATH2.395e-4963.51LOB domain-containing protein 37 OS=Arabidopsis th... [more]
LBD39_ARATH1.041e-4475.45LOB domain-containing protein 39 OS=Arabidopsis th... [more]
LBD40_ARATH1.720e-3960.68LOB domain-containing protein 40 OS=Arabidopsis th... [more]
LBD41_ARATH6.118e-3765.09LOB domain-containing protein 41 OS=Arabidopsis th... [more]
LBD42_ARATH2.571e-3556.41LOB domain-containing protein 42 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06C15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834815 ID=CF834815; Name=CF834815; organism=Citrus sinensis; type=EST; length=662bp
CCAATCCAACTTTTATGCTTTCTTTATAATTATTTATTTTATTTAATTTC
CCTTTTTGCTTCTGTTTTGTATGACGTGTGCTGGGCGAAAAAAAATCAAC
ATGAGTTGCAATGGGTGTAGAGTTCTGAGAAAAGGTTGCAGTGAAAACTG
CTTGCTTCGTCAAAGCATTCAATGGATCGGCACCCCACAAGCTCAAGCAA
ACGCCACCGTTTTTGTTGCCAAGTTCTTCGGCCGCGCCGGCCTCATGTCC
TTCATCTCCGCCGTCCCCGAAACCCAACGTCCCTCATTGTTTCAGTCGCT
GTTATATGAAGCGGTGGGAAGAACAGTGAACCCAGTGAGCGGCGCCGTGG
GGCTTCTGTGGACAGGAAACTGGAACGTGTGCCAGTCGGCGGTTGAGAGA
GTTCTCTGCGGCGGCGCGTTGCAGCCGCTGCCTTGCCCACTGGCGCCGGA
ACTTGATGACGTGTCAGAATCTGCCGTGAACTGTACCAACAATAGTCCAA
AGGACGTCATCACTCCGCCATCGAAGAGGAAGGCCGTTTCTGATTTTCAC
GATGATCTTCATCTGGGTCTGAAGCCTTGTTTGCCGGAGAAGCTTAGGGC
GGAGACGCCGTCTGAGGAGTCCGAAACGACGACGTCGGGAACCGGGTCTG
ATAATTGTTGCT
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