CF834827

Overview
NameCF834827
Unique NameCF834827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 324.324 bits (830), Expect = 2.951e-88
Identity = 161/208 (77.40%), Postives = 171/208 (82.21%), Query Frame = 2 
Query:    2 MGLGLLASRAMRPH----KNSNSRVFIRSIAFKXXXXXXXXXXXXXXXXXXXXXXXRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            MGLG+LASR +RP     ++  S  F+R+I  K                       R+PVGGARVHF NPEDAIEVFVDGY +K+PKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG
Sbjct:    1 MGLGILASRTIRPASRLLQSQTSNFFLRTIVSKPELQSPESAAVSEPEPPTQILPPRNPVGGARVHFSNPEDAIEVFVDGYAVKVPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 208
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.050e-85
Identity = 158/204 (77.45%), Postives = 165/204 (80.88%), Query Frame = 2 
Query:    2 MGLGLLASRAMRPHKNSNSRVFIRSIAFKXXXXXXXXXXXXXXXXXXXXXXXRSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            MGLGLLASRA+R  +   +    R+I                          R PVGGARVH PNPED IEVFVDGYP+KIPKG TVLQACE+AGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTP+AKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG
Sbjct:    1 MGLGLLASRALRSSRIIRNST--RTIVSTPELKNADAAAAAAAADAPSDLPKRHPVGGARVHLPNPEDVIEVFVDGYPVKIPKGMTVLQACEIAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPIAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 202
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_RECAM (NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Reclinomonas americana GN=NAD11 PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.063e-57
Identity = 101/135 (74.81%), Postives = 115/135 (85.19%), Query Frame = 2 
Query:  209 IEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            + VFVDG  +++ KG T+LQAC   G++IPRFCYH RLSIAGNCRMCLVEVEKSPKPVASCAMP +  MKI T+TPL KKAREGV+EFLL+NHPLDCPICDQGGECDLQD +M +GSDRGRF E KR V DKN+G
Sbjct:    2 VNVFVDGLSVEVKKGATILQACAQVGIEIPRFCYHERLSIAGNCRMCLVEVEKSPKPVASCAMPVMDNMKIFTNTPLVKKAREGVLEFLLVNHPLDCPICDQGGECDLQDLTMVYGSDRGRFHEYKRGVEDKNIG 136
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 102/152 (67.11%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FGSDR RF E KR+V DKN+G
Sbjct:   15 KSPKGYVRSTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_PONPY (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pongo pygmaeus GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSKKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 102/151 (67.55%), Postives = 116/151 (76.82%), Query Frame = 2 
Query:  161 SPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FGSDR RF E KR+V DKN+G
Sbjct:   16 SPKGYVRTTGTAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166
[Close]
BLAST of CF834827 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 7.337e-55
Identity = 101/152 (66.45%), Postives = 117/152 (76.97%), Query Frame = 2 
Query:  158 RSPVGGARVHFPNPEDAIEVFVDGYPLKIPKGFTVLQACEVAGVDIPRFCYHSRLSIAGNCRMCLVEVEKSPKPVASCAMPALPGMKIKTDTPLAKKAREGVMEFLLMNHPLDCPICDQGGECDLQDQSMAFGSDRGRFTEMKRSVVDKNLG 613
            +SP G  R       + IEVFVDG  + +  G TVLQACE  G+ IPRFCYH RLS+AGNCRMCLVE+EK+PK VA+CAMP + G  I T++  +KKAREGVMEFLL NHPLDCPICDQGGECDLQDQSM FG+DR RF E KR+V DKN+G
Sbjct:   15 KSPKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKSKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGNDRSRFLEGKRAVEDKNIG 166
The following BLAST results are available for this feature:
BLAST of CF834827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NDUS1_ARATH2.951e-8877.40NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_SOLTU1.050e-8577.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RECAM2.063e-5774.81NADH-ubiquinone oxidoreductase 75 kDa subunit OS=R... [more]
NDUS1_RAT7.337e-5567.11NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PONPY7.337e-5566.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR7.337e-5566.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MOUSE7.337e-5567.55NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MACFA7.337e-5566.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN7.337e-5566.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_GORGO7.337e-5566.45NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06D02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834827 ID=CF834827; Name=CF834827; organism=Citrus sinensis; type=EST; length=614bp
AATGGGGTTAGGGTTGTTAGCATCGAGGGCGATGAGACCCCATAAGAATT
CAAACTCCAGAGTNTTTATCCGGTCCATCGCCTTCAAACCGGAGCTCCAA
TCACCCGAAGCTTCTTCAGCAGCAGCGGCTACAGCGCTCGAACCGGATCT
CCCCCCTCGATCGCCCGTGGGTGGGGCCCGGGTCCATTTCCCCAACCCTG
AAGATGCAATCGAAGTGTTCGTCGATGGTTACCCGCTCAAAATCCCCAAG
GGCTTCACCGTTTTGCAGGCCTGTGAGGTCGCCGGCGTTGACATTCCTAG
ATTTTGTTATCACAGTAGACTTTCGATTGCCGGAAATTGCCGAATGTGTC
TCGTTGAAGTCGAGAAATCGCCCAAACCTGTTGCTTCTTGCGCCATGCCT
GCTCTTCCCGGAATGAAAATTAAGACGGATACACCGTTAGCTAAGAAGGC
GAGAGAAGGGGTGATGGAGTTTTTGTTAATGAATCATCCTTTGGATTGTC
CAATTTGTGATCAGGGTGGTGAATGTGATCTCCAGGATCAGTCTATGGCT
TTCGGTTCTGATCGTGGCCGCTTCACTGAAATGAAAAGATCTGTTGTTGA
TAAGAATCTTGGTC
back to top