CF834849

Overview
NameCF834849
Unique NameCF834849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9766 contig Csv1_Contig9766:62..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.632e-32
Identity = 77/187 (41.18%), Postives = 118/187 (63.10%), Query Frame = 3
Query:   36 ALLIILLQFSTNLASNPSDNSNIEYIRTSWGGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDE---LGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINSYAA 587
            ALL+IL   S   A+        ++I+TS   T Y  +C +SLS YA  I++NP+ LA+TAL ++L  T+     M ++++F G+  R+ A A+ DC+E + DS+D +  S DE   L H + ++F   M +V+TWVSAALTDE TC+DG  G+ ++   K  +R  ++ VA +TSNALAL+N++AA
Sbjct:   12 ALLVILAAASAAPAN--------QFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYA-AIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAA 189          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 49/189 (25.93%), Postives = 102/189 (53.97%), Query Frame = 3
Query:   30 LVALLIILLQFSTNLASNPS----DNSNIEYIRTSWGGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKM-SRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHI-RNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 578
            L+A ++ +   +TN   N       +++   +++    T+Y  LC+ +++    K  ++ K +   +LN+T KA K     + K+ ++  G+ PRE   A+ DC+E I +++DEL  ++++L    +  +      D++T +S+A+T++ TC+DG      +R  +  + +  + V H+ SNALA+I +
Sbjct:   31 LLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVT-ALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQVHVEHMCSNALAMIKN 218          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 52/198 (26.26%), Postives = 106/198 (53.54%), Query Frame = 3
Query:   18 LRHALVALLIILLQFSTNLASNPSDN------SNIEYIRTSWGGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKS---TSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLT--MGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 578
            L  A VALL +      +  ++ ++       S+   +R+S   T Y  LC  ++        ++ K +   ++N+T+ A +    T + ++K  +  G+ PRE   A+ DC+E I +++DEL +++++L H+  +   L    GD++T +S+A+T+++TC+DG      ++  +  + +  + V H+ SNALA+I +
Sbjct:   22 LLSAAVALLFVAAVAGISAGASKANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRK--GLTPREKT-ALHDCLETIDETLDELHETVEDL-HLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQIHVEHMCSNALAMIKN 215          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 52/189 (27.51%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   30 LVALLIILLQFSTNLASNPSDNSNIEY---IRTSWGGTIYRRLCYRSLSVY--AAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNS-NFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 578
            LV   +I +    N   N  DN N  +   +++S   T Y  LC+ +++    A+K  ++ K +   +LNIT  A +     + K+ +   +  RE   A+ DC+E I +++DEL  ++++L    N  +      D++T +SAA+T++ TC+DG      N++ +  +    + V  + SNALA+I +
Sbjct:   39 LVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKV-ALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.895e-13
Identity = 52/189 (27.51%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   30 LVALLIILLQFSTNLASNPSDNSNIEY---IRTSWGGTIYRRLCYRSLSVY--AAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNS-NFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALINS 578
            LV   +I +    N   N  DN N  +   +++S   T Y  LC+ +++    A+K  ++ K +   +LNIT  A +     + K+ +   +  RE   A+ DC+E I +++DEL  ++++L    N  +      D++T +SAA+T++ TC+DG      N++ +  +    + V  + SNALA+I +
Sbjct:   39 LVVAAVIGIVAGVNSRKNSGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKV-ALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDANKHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.588e-11
Identity = 50/194 (25.77%), Postives = 106/194 (54.64%), Query Frame = 3
Query:   30 LVALLIILLQFSTNLASNPSDNSNI--------EYIRTSWGGTIYRRLCYRSL---SVYAAKIKSNPKTLANTALNITLKATKSTSRMMVKMSRF-PGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLT-MGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALI 572
            LVA +I ++    + + N  D+++I          ++++   T++  LCY ++   S ++ K+ S  K +   +LNIT+KA +     + ++ +   G+ PRE   A+ DC+E + +++DEL  ++++L    N       + D++T +S+A+T+++TC+DG      ++  + ++ +    V  + SNALA+I
Sbjct:   31 LVAAVIGVVAGVKSHSKNSDDHADIMAISSSAHAIVKSACSNTLHPELCYSAIVNVSDFSKKVTSQ-KDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKV-ALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQKHVEKMCSNALAMI 222          
BLAST of CF834849 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 3
Query:   33 VALLIILLQFSTNLASNPSDNSNIEYIRTS-------WGGTIYRRLCYRSLSVYAAKIKSNPKTLANTALNITLKATKST---SRMMVKMSRFPGMIPRETAGAVADCIEVIGDSIDELQDSMDELGHIRNSNFWLTMGDVQTWVSAALTDEDTCVDGLQGRPLNRYTKTMIRRHILKVAHLTSNALALI 572
            V L+ +++  +  ++ N SDN+  E I TS          T Y+  C  +L    AK  S+P  L  TA N T+K        S+ M+++ + P         A+  C E++  +I EL  S +ELG          +  ++ W+SA ++ E TC+DG QG   N      I++ +     LT N LA++
Sbjct:   24 VLLISMVVAVTIGVSVNKSDNAGDEEITTSVKAIKDVCAPTDYKETCEDTLRK-DAKDTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDP-----RAKMALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGN--AGETIKKALKTAVQLTHNGLAMV 205          
The following BLAST results are available for this feature:
BLAST of CF834849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
21KD_DAUCA1.632e-3241.1821 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH2.618e-1425.93Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH1.697e-1326.26Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI2.895e-1327.51Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI2.895e-1327.51Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC1.588e-1125.77Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME28_ARATH7.883e-1128.42Putative pectinesterase/pectinesterase inhibitor 2... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06D18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834849 ID=CF834849; Name=CF834849; organism=Citrus sinensis; type=EST; length=677bp
GAATGGAAGGCCCTTTTTTGAGGCATGCACTAGTAGCCCTGCTCATAATT
CTCCTTCAATTCTCCACCAACTTAGCCTCAAACCCATCAGATAATTCAAA
CATAGAGTACATAAGAACATCATGGGGGGGCACAATCTATCGCAGGTTGT
GCTACCGCTCACTCTCAGTCTATGCAGCCAAAATCAAAAGCAACCCCAAA
ACATTAGCCAACACAGCTCTCAACATAACCCTTAAAGCCACAAAATCAAC
GTCGAGAATGATGGTCAAGATGTCGAGATTCCCCGGCATGATCCCGAGGG
AGACCGCAGGGGCAGTGGCAGATTGCATTGAGGTGATCGGTGACTCAATA
GATGAGCTCCAAGATTCTATGGACGAACTGGGTCACATCAGGAACTCGAA
TTTTTGGCTCACAATGGGTGATGTCCAAACATGGGTAAGCGCAGCGTTAA
CGGATGAAGATACTTGCGTGGATGGGCTTCAAGGTAGGCCCTTGAACAGA
TATACGAAGACGATGATCAGGAGGCATATTCTTAAAGTTGCACATTTGAC
AAGCAACGCCTTGGCTCTCATAAATAGTTATGCCGCTGGCAGTAACCCTC
CATCTCCCTAAAGGGATCGGATCAAAGCCATTCTAAATCACTAATTAGAA
ACGCTCTTTCATGCTACTTCATATAGC
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