CF834862

Overview
NameCF834862
Unique NameCF834862
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length278
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834862_ssr151 microsatellite CF834862_ssr151:151..162. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2903 contig Csv1_Contig2903:643..920. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF834862 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.347e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = -1 
Query:  183 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 278
            FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   45 FAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF834862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
UBL1_ORYSJ3.347e-11100.00Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_WHEAT3.347e-11100.00Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_TRYCR3.347e-11100.00Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_SOYBN3.347e-11100.00Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU3.347e-11100.00Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC3.347e-11100.00Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR3.347e-11100.00Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA3.347e-11100.00Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ3.347e-11100.00Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY3.347e-11100.00Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834862 ID=CF834862; Name=CF834862; organism=Citrus sinensis; type=EST; length=278bp
TAGATATTATAATGGGACGTTAGTGGGACCATATCAATATCTTAGAAACA
GAGTTCAACTACCACAAACCAAAATAAACTTCAAATAGTTATTTAAGCTA
TTTCACCAATAGCCAGCAAACATTAACCAAGACAAACCGAAGCAAATAAG
ACACACACACACCCAGATGACCAAACTCAGAAACCTCCACGGAGTCGGAG
CACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCAAGAGTCC
TTCCATCCTCAAGTTGTTTTCCAGCAAA
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