CF834889

Overview
NameCF834889
Unique NameCF834889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length591
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: R35A3_ARATH (60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.521e-49
Identity = 91/112 (81.25%), Postives = 101/112 (90.18%), Query Frame = 3
Query:   45 LVKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +VKGRQGERV+LYV GTILGYKRSKSNQYPNTSL+QI+GVN +EE+ WY GKR+AYI KAKTKKNG+HYRCIWGKV R H NSG+VRAKF SNL PKSMG RVRVFMYP+NI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: R35A1_ARATH (60S ribosomal protein L35a-1 OS=Arabidopsis thaliana GN=RPL35AA PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 9.521e-49
Identity = 90/112 (80.36%), Postives = 101/112 (90.18%), Query Frame = 3
Query:   45 LVKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +VKGRQGERV+LYV GTILGYKRSKSNQYPNTSL+Q++GVN  EE++WY GKR+AYI KAKTKKNG+HYRCIWGKV R H NSG+VRAKF SNL PKSMG RVRVFMYP+NI
Sbjct:    1 MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLVQVEGVNTTEEVSWYKGKRMAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSMGSRVRVFMYPSNI 112          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: R35A2_ARATH (60S ribosomal protein L35a-2 OS=Arabidopsis thaliana GN=RPL35AB PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.060e-48
Identity = 90/111 (81.08%), Postives = 100/111 (90.09%), Query Frame = 3
Query:   48 VKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +KGRQGERV+LYV GT+LGYKRSKSNQYPNTSLIQI+GVN +EE+ WY GKRLAYI KAKTKKNG+HYRCIWGKV R H NSG+VR+KF SNL PKSMG RVRVFMYP+NI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: R35A4_ARATH (60S ribosomal protein L35a-4 OS=Arabidopsis thaliana GN=RPL35AD PE=3 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 1.053e-47
Identity = 89/111 (80.18%), Postives = 100/111 (90.09%), Query Frame = 3
Query:   48 VKGRQGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +KGRQGERV+LYV GT+LGYKRSKSNQYPNTSL+QI+GVN +EE+ WY GKRLAYI KAKTKKNG+HYRCIWGKV R H NSG+VR+KF SNL PKSMG RVRVFMYP+NI
Sbjct:    1 MKGRQGERVRLYVRGTVLGYKRSKSNQYPNTSLVQIEGVNTQEEVNWYKGKRLAYIYKAKTKKNGSHYRCIWGKVTRPHGNSGVVRSKFTSNLPPKSMGARVRVFMYPSNI 111          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL33B_YEAST (60S ribosomal protein L33-B OS=Saccharomyces cerevisiae GN=RPL33B PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.871e-23
Identity = 52/105 (49.52%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   66 ERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            E  +LYV G  L Y+RSK    PN SLI+I+GV   +E  +Y GKR+AY+ +A  +  G+  R +WGKV R+H NSG+VRA F++NL  K+ G  VR+F+YP+NI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQEAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL35A_DICDI (60S ribosomal protein L35a OS=Dictyostelium discoideum GN=rpl35a PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.973e-23
Identity = 49/103 (47.57%), Postives = 76/103 (73.79%), Query Frame = 3
Query:   75 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICK-AKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            K+Y  G +LGY+RS++ QYPN SLI+I+GV  +E+  +Y GK++  + K +K+ KN T ++  WGK+ ++H +SG+V+A+F  NL PK+MG  VRV +YP+NI
Sbjct:    3 KIYSKGVVLGYRRSQATQYPNISLIKIEGVVSREDSTFYLGKKVCLVSKVSKSAKNPTGHKISWGKICKTHGSSGVVQARFARNLPPKAMGAPVRVMLYPSNI 105          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL33A_YEAST (60S ribosomal protein L33-A OS=Saccharomyces cerevisiae GN=RPL33A PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 3
Query:   66 ERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            E  +LYV G  L Y+RSK    PN SLI+I+GV   ++  +Y GKR+AY+ +A  +  G+  R +WGKV R+H NSG+VRA F++NL  K+ G  VR+F+YP+NI
Sbjct:    3 ESHRLYVKGKHLSYQRSKRVNNPNVSLIKIEGVATPQDAQFYLGKRIAYVYRASKEVRGSKIRVMWGKVTRTHGNSGVVRATFRNNLPAKTFGASVRIFLYPSNI 107          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL35A_XENLA (60S ribosomal protein L35a OS=Xenopus laevis GN=rpl35a PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.433e-20
Identity = 53/109 (48.62%), Postives = 72/109 (66.06%), Query Frame = 3
Query:   75 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +L+   T  GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:    4 RLWCKATFAGYKRGLRNQREHTALLKIEGVYARDETEFYFGKRCAYVYKAKNNTVTPGGKPNRT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL33A_SCHPO (60S ribosomal protein L33-A OS=Schizosaccharomyces pombe GN=rpl33a PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.444e-20
Identity = 49/107 (45.79%), Postives = 70/107 (65.42%), Query Frame = 3
Query:   60 QGERVKLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKTKKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            QG R  LYV    L ++RSK   +P TSL++I+G + KEE  +Y GKR+ ++ K+     G+  R IWG V+R H NSG+VRA+F  NL PK+ G  +RV +YP+N+
Sbjct:    4 QGHR--LYVKAKHLSFQRSKHVIHPGTSLVKIEGCDSKEEAQFYLGKRICFVYKSNKPVRGSKIRVIWGTVSRPHGNSGVVRARFTHNLPPKTFGASLRVMLYPSNV 108          
BLAST of CF834889 vs. ExPASy Swiss-Prot
Match: RL35A_RAT (60S ribosomal protein L35a OS=Rattus norvegicus GN=Rpl35a PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.110e-20
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 3
Query:   75 KLYV*GTILGYKRSKSNQYPNTSLIQIKGVNIKEEMAWY*GKRLAYICKAKT-------KKNGTHYRCIWGKVARSHSNSGIVRAKFKSNLLPKSMGDRVRVFMYPNNI 380
            +L+      GYKR   NQ  +T+L++I+GV  ++E  +Y GKR AY+ KAK        K N T  R IWGKV R+H NSG+VRAKF+SNL  K++G R+RV +YP+ I
Sbjct:    4 RLWCKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVYKAKNNTVTPGGKPNKT--RVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRIRVMLYPSRI 110          
The following BLAST results are available for this feature:
BLAST of CF834889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
R35A3_ARATH9.521e-4981.2560S ribosomal protein L35a-3 OS=Arabidopsis thalia... [more]
R35A1_ARATH9.521e-4980.3660S ribosomal protein L35a-1 OS=Arabidopsis thalia... [more]
R35A2_ARATH8.060e-4881.0860S ribosomal protein L35a-2 OS=Arabidopsis thalia... [more]
R35A4_ARATH1.053e-4780.1860S ribosomal protein L35a-4 OS=Arabidopsis thalia... [more]
RL33B_YEAST6.871e-2349.5260S ribosomal protein L33-B OS=Saccharomyces cerev... [more]
RL35A_DICDI8.973e-2347.5760S ribosomal protein L35a OS=Dictyostelium discoi... [more]
RL33A_YEAST1.531e-2248.5760S ribosomal protein L33-A OS=Saccharomyces cerev... [more]
RL35A_XENLA1.433e-2048.6260S ribosomal protein L35a OS=Xenopus laevis GN=rp... [more]
RL33A_SCHPO2.444e-2045.7960S ribosomal protein L33-A OS=Schizosaccharomyces... [more]
RL35A_RAT7.110e-2047.7160S ribosomal protein L35a OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06E18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834889 ID=CF834889; Name=CF834889; organism=Citrus sinensis; type=EST; length=591bp
CGGTTAAGGCGGCAAGTAGGCAGGCAGAGCTTCAATCGTGACCTTTGGTG
AAGGGCAGGCAAGGCGAGCGCGTCAAACTCTATGTTTGAGGAACAATTCT
GGGATACAAAAGGTCCAAATCAAACCAGTATCCAAACACATCATTGATTC
AGATCAAGGGAGTGAACATAAAGGAAGAGATGGCGTGGTACTGAGGCAAG
CGTTTGGCTTACATTTGCAAGGCCAAGACTAAGAAGAATGGGACACACTA
TCGTTGCATTTGGGGGAAAGTTGCCAGATCTCACAGTAACAGCGGCATCG
TTCGCGCCAAGTTCAAGTCCAATCTCCTTCCCAAATCCATGGGAGATAGA
GTTAGGGTTTTCATGTATCCCAACAACATATGAGCAACATGGTTCGAATA
GCTACTAGATCCAAAAGTAAGGTACCTTCTGAATTTGTGATTTATTCACT
TAAGAGTTATGTTTCAAGATTTTGGACTCGAGAGTTATACTGGCTAGCGT
GTTGGCTTTTACTTCTGTTCAATTAGTGTGGATTTTGGAACATTAATTTT
AATGTTTATGCTTAGTTTTTTTTTTAAAAAAAAAAAAAAAA
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