CF834895

Overview
NameCF834895
Unique NameCF834895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2738 contig Csv1_Contig2738:37..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_AVEFA (Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.284e-41
Identity = 80/125 (64.00%), Postives = 98/125 (78.40%), Query Frame = 3
Query:   21 EQAEKSDTVVPWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 395
            +Q + ++  V WEDQQNIN+F +LNNRFHEL DEI+ AKE N+NLEDAGNELIL DED+VRFQIGEVFAH+P ++VE R+E+MKE  +            +LAQM ELKKILYGKF+D+INLEED
Sbjct:    2 QQGDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRFQIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINLEED 126          
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_ARATH (Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=API3 PE=1 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 7.561e-38
Identity = 77/120 (64.17%), Postives = 92/120 (76.67%), Query Frame = 3
Query:   36 SDTVVPWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 395
            S+  V WEDQQNIN FS+LNNR H+L+D+IK AKE  +NLEDAGNELIL DE++VRFQIGEVFAHVPR++VET+IEEMKE               ++ QM  LKK+LY KF+DSINLEED
Sbjct:    9 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 128          
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_HUMAN (Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.887e-15
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:   21 EQAEKSDTVVPWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 395
            ++A   D  V +EDQQ INKF++  +R  EL++EI+  K+   NLEDA ++++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_BOVIN (Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.994e-15
Identity = 46/127 (36.22%), Postives = 72/127 (56.69%), Query Frame = 3
Query:   21 EQAEKSDTVVPWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEED 395
            ++A   D  V +EDQQ INKF++  +R  EL++EI+  K+   NLEDA  +++L D+D  ++ +QIG+VF    +EE +  +EE K+               +   + +LK  LY KF  +INLE D
Sbjct:    6 KKAAAEDVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQIGDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEAD 132          
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_YEAST (Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN=GIM3 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 3
Query:   24 QAEKSDTVVPWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLE 389
            Q ++++T V +EDQQ IN+FSKL  R   +  E+   +E  + L+D   E+ L DED  V++++G++F  + + +V  ++E+  E               + ++++ LK ILY KF D+INLE
Sbjct:    6 QGQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQYKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNINLE 128          
BLAST of CF834895 vs. ExPASy Swiss-Prot
Match: PFD4_DICDI (Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.199e-12
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 3
Query:   30 EKSDTVVPWE----DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRFQIGEVFAHVPREEVETRIEEMKEVNSXXXXXXXXXXXXVLAQMNELKKILYGKFRDSINLEE 392
            EK D V+  E    DQ+ IN F +LNNR HEL  E K  +E  +   D+ ++L + D+D   ++ +GE F  V +E+ E+ IE+                  +  +  ELK ILY KF++SINLEE
Sbjct:    7 EKVDEVLETEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGEAFLEVNKEDAESLIEKYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNSINLEE 132          
The following BLAST results are available for this feature:
BLAST of CF834895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PFD4_AVEFA4.284e-4164.00Probable prefoldin subunit 4 OS=Avena fatua GN=VIP... [more]
PFD4_ARATH7.561e-3864.17Probable prefoldin subunit 4 OS=Arabidopsis thalia... [more]
PFD4_HUMAN6.887e-1536.22Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 ... [more]
PFD4_BOVIN8.994e-1536.22Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV... [more]
PFD4_YEAST1.099e-1233.33Prefoldin subunit 4 OS=Saccharomyces cerevisiae GN... [more]
PFD4_DICDI3.199e-1236.51Probable prefoldin subunit 4 OS=Dictyostelium disc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06E23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06E23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834895 ID=CF834895; Name=CF834895; organism=Citrus sinensis; type=EST; length=590bp
TCGAAATTCACCATTTAAATGAACAGGCTGAGAAATCTGATACGGTGGTG
CCATGGGAAGATCAACAAAACATTAACAAATTTTCCAAATTAAACAACAG
ATTCCACGAGCTTGAAGATGAAATCAAGTTTGCCAAGGAAACAAACGATA
ATCTGGAGGATGCAGGCAATGAATTGATTCTCACTGATGAAGACATAGTT
CGCTTCCAAATAGGCGAAGTCTTTGCTCATGTGCCAAGGGAAGAAGTGGA
GACCAGAATAGAAGAGATGAAAGAGGTGAATAGCAAAACTCTGGAAAAAC
TTGAGAAAGAGAAAGAAACTGTTCTGGCCCAAATGAATGAATTGAAGAAG
ATTCTATACGGGAAGTTCAGGGACTCTATCAACTTAGAGGAGGATTAATA
CACCATGACTGTCATTTCTCTGTAATTTGGTTGCCTCTCACTTTTGATTT
AAATATTAGGGATGACTTTACTCCAATCTTCAACTTGCAATTGAGTATCC
TGAGTGAAGCCAGTGCCGATTTTATTTACTACAAATTGGTTTTTTTTTTT
TTTTTGGTTCCAGTTTTAGAACTGTCCAACTTGATATTAA
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