CF834913

Overview
NameCF834913
Unique NameCF834913
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_DICDI (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20
Identity = 61/181 (33.70%), Postives = 95/181 (52.49%), Query Frame = 3
Query:  156 EGCRVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLSLL 698
            EG  V+LDIN+G++    ++  GS +KIG K   +  +IG  + S FQV N K    L R+     DD +     +++    DNR +  +N AQ L+ EDI+EM+++G     I++ ++ NS +F+ KTSFSQ                  +P  +S+ EAY+KK+  +I  LR D    L
Sbjct:   37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLERITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVENSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQL 214          
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_BOVIN (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3
Query:  180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692
            I DGD +V  R      +++  +           L  +IG  +G+ F+V NG    P   +  P++E     KE         DNR I+DD K+Q L+ +DI  ++ +G  GEEIV+ LI NS TF  KT F+Q+                 +P  R +   Y+ + P +I  +R D L+
Sbjct:   20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNIIGHSYGTTFEVTNGGSLQPKKKKEEPTSET----KEAGT------DNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKPSTRILSVMYYAREPGKINHMRYDTLA 189          
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_MOUSE (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13
Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 3
Query:  180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692
            I+DGD +V  R      +++  +           L   IG  +GS F V +G       ++    E+   E ++A       DNR IVDD K+Q L+ +DI  ++ +G  GEEIV+ LI NS TF  KT F+Q+                 +P  R +   Y+ + P +I  +R D L+
Sbjct:   21 IHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVSSGGS----LQLRKKLEEPASETKEAGT-----DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLA 190          
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_HUMAN (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13
Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = 3
Query:  180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692
            I DGD +V  R      +++  +           L  +IG  +G+ F+V +G    P   R  P+ E     KE         DNR IVDD K+Q L+ +DI  ++ +G  GEEIV+ LI NS TF  KT F+Q+                 +P  R +   Y+ + P +I  +R D L+
Sbjct:   20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKKREEPTAET----KEAGT------DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLA 189          
The following BLAST results are available for this feature:
BLAST of CF834913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TRM6_DICDI2.598e-2033.70tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
TRM6_BOVIN1.803e-1330.00tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
TRM6_MOUSE3.076e-1329.61tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
TRM6_HUMAN5.246e-1330.56tRNA (adenine-N(1)-)-methyltransferase non-catalyt... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06F11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834913 ID=CF834913; Name=CF834913; organism=Citrus sinensis; type=EST; length=699bp
CTGGCGGAATCTTTTAAGAGTTGAAAATATTTTATTTCCCTTTAATTCTA
AACGTTATTTGTAATATTCTGATTCTCATCAAAGAAAACAAGAATTCAAT
AATGTCACAAAATAATGTTCAATTGGATCCAATCCGAAACGCCCAACTCA
CTTGGGAAGGCTGCAGGGTATTGCTGGATATAAATGACGGCGACCGTCTC
GTTTTCGCTCGCCTCACTTCCGGCTCGACGCTGAAAATTGGGAATAAGAA
TTGCTCTCTGCAGCCGTTAATTGGTTGCCCTTTCGGTTCTCTCTTTCAAG
TTGATAATGGAAAGGAAGGTCCTAATTTATCTCGGGTTATTCCCTCCACA
GAAGATGATGTGCAAGAAAAAGAAGATGCTCAAATAAGTGGTGAATTTCG
GGACAATCGAGCTATTGTTGATGATAATAAAGCTCAGAGCTTAAGTGGTG
AAGATATTGATGAAATGCGACGACAGGGTGCAACAGGTGAGGAAATTGTT
GAAGCACTTATTGCTAATAGTGCAACATTTGAGAAAAAGACATCATTTTC
GCAGGAGAAATATAAACTTAAAAAGCAAAAGAAGTATGCTCCCAAAGTCC
TTCTAAGGCGTCCTTTTGCACGAAGCATATGTGAGGCATATTTCAAGAAA
AATCCAGCTAGAATTGGATTCTTGCGTGTAGATATGTTATCTCTTCTGC
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