CF834913
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_DICDI (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.598e-20 Identity = 61/181 (33.70%), Postives = 95/181 (52.49%), Query Frame = 3 Query: 156 EGCRVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLSLL 698 EG V+LDIN+G++ ++ GS +KIG K + +IG + S FQV N K L R+ DD + +++ DNR + +N AQ L+ EDI+EM+++G I++ ++ NS +F+ KTSFSQ +P +S+ EAY+KK+ +I LR D L Sbjct: 37 EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLERITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVENSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQL 214
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_BOVIN (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 54/180 (30.00%), Postives = 83/180 (46.11%), Query Frame = 3 Query: 180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692 I DGD +V R +++ + L +IG +G+ F+V NG P + P++E KE DNR I+DD K+Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P R + Y+ + P +I +R D L+ Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNIIGHSYGTTFEVTNGGSLQPKKKKEEPTSET----KEAGT------DNRNIIDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAMITVVKPSTRILSVMYYAREPGKINHMRYDTLA 189
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_MOUSE (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.076e-13 Identity = 53/179 (29.61%), Postives = 82/179 (45.81%), Query Frame = 3 Query: 180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692 I+DGD +V R +++ + L IG +GS F V +G ++ E+ E ++A DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P R + Y+ + P +I +R D L+ Sbjct: 21 IHDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNAIGHSYGSAFDVSSGGS----LQLRKKLEEPASETKEAGT-----DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIVTILKPSTRILSIMYYAREPGKINHMRYDTLA 190
BLAST of CF834913 vs. ExPASy Swiss-Prot
Match: TRM6_HUMAN (tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.246e-13 Identity = 55/180 (30.56%), Postives = 82/180 (45.56%), Query Frame = 3 Query: 180 INDGDRLVFARLTSGSTLKIGNKN--------CSLQPLIGCPFGSLFQVDNGKE-GPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQSLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAYFKKNPARIGFLRVDMLS 692 I DGD +V R +++ + L +IG +G+ F+V +G P R P+ E KE DNR IVDD K+Q L+ +DI ++ +G GEEIV+ LI NS TF KT F+Q+ +P R + Y+ + P +I +R D L+ Sbjct: 20 IRDGDFVVLKREDVFKAVQVQRRKKVTFEKQWFYLDNVIGHSYGTAFEVTSGGSLQPKKKREEPTAET----KEAGT------DNRNIVDDGKSQKLTQDDIKALKDKGIKGEEIVQQLIENSTTFRDKTEFAQDKYIKKKKKKYEAIITVVKPSTRILSIMYYAREPGKINHMRYDTLA 189 The following BLAST results are available for this feature:
BLAST of CF834913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834913 ID=CF834913; Name=CF834913; organism=Citrus sinensis; type=EST; length=699bpback to top |