CF834915

Overview
NameCF834915
Unique NameCF834915
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1847 contig Csv1_Contig1847:16..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF834915 vs. ExPASy Swiss-Prot
Match: CX5C3_ARATH (Probable cytochrome c oxidase subunit 5C-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.779e-14
Identity = 36/55 (65.45%), Postives = 40/55 (72.73%), Query Frame = 3 
Query:   69 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 233
            MAGHKIAHATLKGPSVVKE+             WKM+ WN QRK+RVFYDLLE+G
Sbjct:    1 MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERG 55
[Close]
BLAST of CF834915 vs. ExPASy Swiss-Prot
Match: CX5C2_ARATH (Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.816e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:   69 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 233
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
[Close]
BLAST of CF834915 vs. ExPASy Swiss-Prot
Match: CX5C1_ARATH (Probable cytochrome c oxidase subunit 5C-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:   69 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 233
            MAGHK+AHATLKGPSVVKE+             WKM+ WN QRK+R FYDLLE+G
Sbjct:    1 MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERG 55
[Close]
BLAST of CF834915 vs. ExPASy Swiss-Prot
Match: COX5C_ORYSJ (Cytochrome c oxidase subunit 5C OS=Oryza sativa subsp. japonica GN=COX5C PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.372e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 3 
Query:   69 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 233
            MAG +IAHATLKGPSVVKEIC            WKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRIAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKG 55
[Close]
BLAST of CF834915 vs. ExPASy Swiss-Prot
Match: COX5C_HORVU (Cytochrome c oxidase subunit 5C OS=Hordeum vulgare GN=COX5C PE=3 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.842e-12
Identity = 33/55 (60.00%), Postives = 38/55 (69.09%), Query Frame = 3 
Query:   69 MAGHKIAHATLKGPSVVKEICXXXXXXXXXXXXWKMNQWNNQRKSRVFYDLLEKG 233
            MAG ++AHATLKGPSVVKEI             WKM+ WN QRK+R FYD+LEKG
Sbjct:    1 MAGGRVAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKG 55
The following BLAST results are available for this feature:
BLAST of CF834915 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CX5C3_ARATH4.779e-1465.45Probable cytochrome c oxidase subunit 5C-3 OS=Arab... [more]
CX5C2_ARATH1.816e-1361.82Cytochrome c oxidase subunit 5C-2 OS=Arabidopsis t... [more]
CX5C1_ARATH2.372e-1361.82Probable cytochrome c oxidase subunit 5C-1 OS=Arab... [more]
COX5C_ORYSJ2.372e-1363.64Cytochrome c oxidase subunit 5C OS=Oryza sativa su... [more]
COX5C_HORVU5.842e-1260.00Cytochrome c oxidase subunit 5C OS=Hordeum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06F12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834915 ID=CF834915; Name=CF834915; organism=Citrus sinensis; type=EST; length=608bp
CTGACTCGTGCTATTCGCTTAATCGGTCTCGTCTCCGCCCGGGTTTATAG
CATTTAACTAGAAGTGAAATGGCTGGCCACAAGATTGCTCATGCCACCTT
GAAAGGTCCAAGCGTTGTCAAGGAGATATGTTTAGGAATTACACTGGGGC
TGGCTGCTGGTGGTCTTTGGAAGATGAATCAGTGGAATAATCAAAGAAAG
TCAAGGGTATTTTATGACTTGCTAGAGAAAGGTGAAGTTAGCGTTGTTGT
AGAAGAATAAAGTGTTTACGTTATCACGGTGATGATGTGGATGGCTTCAA
TGGTACTCTGATAATTTGGATTCTCCTTATTTGGCGCCTAGATCTCACAT
GATCTTCCATAGTTTGGGTTTTCAACAAATAAATTTTCTTTTCTGAGACT
TGACTGATTGTTGGTTATGAAATTGTAAAGATTCTTGGTTCTCTTCATCA
AGCATTATCTGTCTTGTTTACTTTATTTGAGATGTTCTTAGTTTGTCACC
TGTTATGTTTGTGAATGACAAATTTGCACGTCTGGAACAAGAAATACATT
CTTTTGAGTGCAACAAGCTTAACTCCATTGAGTTAGTTGTTCAAAAAAAA
AAAAAAAA
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