CF834924

Overview
NameCF834924
Unique NameCF834924
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1088 contig Csv1_Contig1088:1..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_PEA (60S ribosomal protein L27 OS=Pisum sativum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 74/81 (91.36%), Postives = 79/81 (97.53%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVKFLKPNKAVILLQGRYAG+KAVIVK+FDDGTRE+ YGHCLVAGIKK+P KVI+KDSAKKTAKKSRVKAFVKLVNYQHLM
Sbjct:    1 MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAKKTAKKSRVKAFVKLVNYQHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL273_ARATH (60S ribosomal protein L27-3 OS=Arabidopsis thaliana GN=RPL27C PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 4.093e-35
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDG R+R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLM
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL272_ARATH (60S ribosomal protein L27-2 OS=Arabidopsis thaliana GN=RPL27B PE=2 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 5.346e-35
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVKFLK NKAVILLQGRYAG+KAVI+KSFDDGT +R YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F+KLVNYQHLM
Sbjct:    1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_SOLTU (60S ribosomal protein L27 OS=Solanum tuberosum GN=RPL27 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.456e-32
Identity = 66/81 (81.48%), Postives = 74/81 (91.36%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KFLKPNKAVILLQG+YAGRKAVIV++FD+GTR+R YGHCLVAGI +YP KVIRKDSAKK  KKSRVKAF+KLVNY H+M
Sbjct:    1 MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAKKAGKKSRVKAFIKLVNYNHIM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL271_ARATH (60S ribosomal protein L27-1 OS=Arabidopsis thaliana GN=RPL27A PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.243e-32
Identity = 66/81 (81.48%), Postives = 73/81 (90.12%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVK +KP KAVILLQGRY G+KAVIVKSFDDGT E+ YGHCLVAG+KKYP KVIRKDSAKKTAKKSRVK F K++NYQH+M
Sbjct:    1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_PYRST (60S ribosomal protein L27 OS=Pyrobotrys stellata GN=RPL27 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.007e-23
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            MVKFLK  K V++L GR+AG+KAVIV++FDDGT  R YGH LV G++K P KV ++ S KK AKKS +K F+K VNY HLM
Sbjct:    1 MVKFLKSGKVVVVLSGRFAGKKAVIVRNFDDGTSSRPYGHALVVGLQKEPRKVTKRQSQKKQAKKSTLKTFIKTVNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_HIPCM (60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLM
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTAPMGKKKIAKRSKIKAFVKVYNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_DANRE (60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++KAFVK+ NY HLM
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVAGIDRYPRKVTATMGKKKIAKRSKIKAFVKVFNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_ICTPU (60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KF+KP K V++L GRYAGRKAVIVK+ DDGT +R Y H LV+GI +YP KV      KK AK+S++KAFVK+ NY HLM
Sbjct:    1 MGKFMKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAKRSKIKAFVKVFNYNHLM 81          
BLAST of CF834924 vs. ExPASy Swiss-Prot
Match: RL27_RAT (60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.778e-22
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2
Query:  494 MVKFLKPNKAVILLQGRYAGRKAVIVKSFDDGTRERAYGHCLVAGIKKYPGKVIRKDSAKKTAKKSRVKAFVKLVNYQHLM 736
            M KF+KP K V++L GRY+GRKAVIVK+ DDGT +R Y H LVAGI +YP KV      KK AK+S++K+FVK+ NY HLM
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLM 81          
The following BLAST results are available for this feature:
BLAST of CF834924 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL27_PEA2.170e-3691.3660S ribosomal protein L27 OS=Pisum sativum GN=RPL2... [more]
RL273_ARATH4.093e-3587.6560S ribosomal protein L27-3 OS=Arabidopsis thalian... [more]
RL272_ARATH5.346e-3587.6560S ribosomal protein L27-2 OS=Arabidopsis thalian... [more]
RL27_SOLTU1.456e-3281.4860S ribosomal protein L27 OS=Solanum tuberosum GN=... [more]
RL271_ARATH3.243e-3281.4860S ribosomal protein L27-1 OS=Arabidopsis thalian... [more]
RL27_PYRST8.007e-2361.7360S ribosomal protein L27 OS=Pyrobotrys stellata G... [more]
RL27_HIPCM1.784e-2262.9660S ribosomal protein L27 OS=Hippocampus comes GN=... [more]
RL27_DANRE1.784e-2262.9660S ribosomal protein L27 OS=Danio rerio GN=rpl27 ... [more]
RL27_ICTPU3.043e-2261.7360S ribosomal protein L27 OS=Ictalurus punctatus G... [more]
RL27_RAT6.778e-2260.4960S ribosomal protein L27 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06F18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834924 ID=CF834924; Name=CF834924; organism=Citrus sinensis; type=EST; length=736bp
CGGTTTATTTTTTTTTTTTTTTATTAAGAACCAAATATTATCCCCGATTA
GAATTCCACAATTGCAACAACCCGAATTACAGTCATCAAAAATGTATCCT
CTCATCTCACAACCACCCCTTTTTCTTATCTCTTTGGGAACCATATGAAT
TTCCCAAGAAATATCCACTCCCTCAAGCCATTGTGCCTAAAGTTTATATA
CTCCAGGCTAAGCCCGCTGTTTTTATTCTGGTTGTGTGCGGGGAAAATCT
GCAGAAAAATAAGCTTTGAAAGGTAAAGGCCATAGCCATGTCTCTTCCAT
AGGTTACTTCATATCTCATTCAAGTTAATGAAAGATCACGTATTATCAGA
AAGACTAAAGTGGTTACAAAGTTGTGCCTCCACCATCTGACATAAGAGAT
ACAGCAGCTGCAGCAGCAGTAGGAACAACCCCTGTTGAAACACCTGGTTT
TGACAAATGGAGAGCCGCGGGTGCGCGAGGAGCGAGAGTTGAAATGGTGA
AGTTTCTGAAACCAAACAAGGCCGTGATCCTTCTTCAGGGCCGTTACGCC
GGCCGGAAGGCGGTGATCGTGAAGTCGTTCGACGACGGGACCCGCGAGAG
GGCGTACGGGCACTGTTTGGTAGCGGGGATAAAGAAGTACCCGGGCAAGG
TCATCCGCAAGGACTCGGCGAAGAAGACAGCGAAGAAGTCGCGCGTCAAG
GCCTTCGTCAAGTTGGTCAACTACCAGCACCTGATG
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