CF834933

Overview
NameCF834933
Unique NameCF834933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length581
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834933_ssr271 microsatellite CF834933_ssr271:271..282. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2838 contig Csv1_Contig2838:932..1512. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_BOVIN (Phosphate carrier protein, mitochondrial OS=Bos taurus GN=SLC25A3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.645e-13
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            CSKP QL ++           AIVSHPAD++VS LN  KG++  + +K+LG    + +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  257 CSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASEVLKRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_CHOFU (Phosphate carrier protein, mitochondrial OS=Choristoneura fumiferana PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.121e-13
Identity = 45/85 (52.94%), Postives = 53/85 (62.35%), Query Frame = -2
Query:  326 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFV 580
            CSK  QL ++           AIVSHPAD +VS LN  K ATVG  V KLG +A   +GL  RI+MIGTLT  QW IYDA KV++
Sbjct:  242 CSKGEQLVVTFAAGYIAGVFCAIVSHPADTVVSKLNQDKTATVGSIVGKLG-FAGVWKGLGPRIIMIGTLTALQWFIYDAVKVWL 325          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_PONAB (Phosphate carrier protein, mitochondrial OS=Pongo abelii GN=SLC25A3 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            CSKP QL ++           AIVSHPAD++VS LN  KG++    +K+LG    + +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  256 CSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 341          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_HUMAN (Phosphate carrier protein, mitochondrial OS=Homo sapiens GN=SLC25A3 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.809e-12
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            CSKP QL ++           AIVSHPAD++VS LN  KG++    +K+LG    + +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  257 CSKPEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSSASLVLKRLGFKGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 342          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_CAEEL (Phosphate carrier protein, mitochondrial OS=Caenorhabditis elegans GN=F01G4.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.264e-12
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            CSK  QL ++           AIVSHPAD +VS LN    AT G  +KKLG +A   +GL  RI+MIGTLT  QW IYD+ KV + L
Sbjct:  235 CSKAEQLVVTFVAGYIAGVFCAIVSHPADTVVSKLNQDSQATAGGILKKLG-FAGVWKGLVPRIIMIGTLTALQWFIYDSVKVALNL 320          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_RAT (Phosphate carrier protein, mitochondrial OS=Rattus norvegicus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            C+K  QL ++           AIVSHPAD++VS LN  KG+T    +++LG    + +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  251 CTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 336          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_MOUSE (Phosphate carrier protein, mitochondrial OS=Mus musculus GN=Slc25a3 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-11
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  320 CSKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAKGATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVGL 580
            C+K  QL ++           AIVSHPAD++VS LN  KG+T    +++LG    + +GL  RI+MIGTLT  QW IYD+ KV+  L
Sbjct:  252 CTKAEQLVVTFVAGYIAGVFCAIVSHPADSVVSVLNKEKGSTASQVLQRLGFRGVW-KGLFARIIMIGTLTALQWFIYDSVKVYFRL 337          
BLAST of CF834933 vs. ExPASy Swiss-Prot
Match: MPCP_SCHPO (Probable mitochondrial phosphate carrier protein OS=Schizosaccharomyces pombe GN=SPBC1703.13c PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 42/91 (46.15%), Postives = 54/91 (59.34%), Query Frame = -2
Query:  323 SKPWQLGISXXXXXXXXXXXAIVSHPADNLVSFLNNAK------GATVGDAVKKLGLWAPFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 577
            SK  ++GIS           AI+SHPAD +VS LN+ K      GA      K++G ++    GL +RIVMIGTLTGAQW IYD+FK+  G
Sbjct:  216 SKAEKIGISFAGGYMAGVLCAIISHPADVMVSKLNSNKKAGEGAGAAAARIYKEIG-FSGLWNGLGVRIVMIGTLTGAQWLIYDSFKIMCG 305          
The following BLAST results are available for this feature:
BLAST of CF834933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MPCP_BOVIN3.645e-1347.13Phosphate carrier protein, mitochondrial OS=Bos ta... [more]
MPCP_CHOFU8.121e-1352.94Phosphate carrier protein, mitochondrial OS=Choris... [more]
MPCP_PONAB1.809e-1247.13Phosphate carrier protein, mitochondrial OS=Pongo ... [more]
MPCP_HUMAN1.809e-1247.13Phosphate carrier protein, mitochondrial OS=Homo s... [more]
MPCP_CAEEL5.264e-1249.43Phosphate carrier protein, mitochondrial OS=Caenor... [more]
MPCP_RAT1.173e-1144.83Phosphate carrier protein, mitochondrial OS=Rattus... [more]
MPCP_MOUSE1.173e-1144.83Phosphate carrier protein, mitochondrial OS=Mus mu... [more]
MPCP_SCHPO5.820e-1146.15Probable mitochondrial phosphate carrier protein O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06F23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834933 ID=CF834933; Name=CF834933; organism=Citrus sinensis; type=EST; length=581bp
TTTTTTTTTTTTTTTTCGAGTGAAATTTCCTGTATAATCTAACCCCTTTT
GATTTCTGATATTTGGATGAAAACAAAACCATCCTCCCTAAAAGCAAATC
TTAAGCTCGAACAAATAGTTCTCAATTATAAAGAATACTCTGACTTGAGA
CACTCAAGCGCCTTCAATTTTGTCACCTATGTTTATTAATCCCTATCAAG
AAGTTCTCCTGGAATCCACAAAACCCAAAATAAAACAATTCTATTTGGTT
GACCTACACCTTTGCAAGCTCAGCAGCAGCAGGGGCAGGAGCAACAGGAG
CAACACCACCAGTGGTTGGCAGTCCCACAAAAACTTTGAATGCATCATAG
ATTCCCCATTGAGCTCCAGTGAGTGTCCCAATCATGACAATACGGAGAGG
AAGCCCACGGGTAAACGGAGCCCACAAACCTAGCTTCTTCACAGCATCAC
CAACAGTTGCTCCTTTGGCATTGTTAAGGAAAGAGACAAGATTGTCAGCA
GGATGCGACACAATAGCACCGAAAACACCAGCCACATAACCACCAGCAAA
ACTAATTCCAAGCTGCCAAGGTTTGCTGCAC
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