CF834935

Overview
NameCF834935
Unique NameCF834935
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834935 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.696e-21
Identity = 49/73 (67.12%), Postives = 61/73 (83.56%), Query Frame = -2
Query:  102 RMSPGFFEVFAFNGPAPERINGRLPNNGFVAALGVEISKGQDVFAQLSVGGVAWFLGSSVLLTVASLVPLFKG 320
            +MS  F ++ AF+GPAPERINGRL   GFVAA+GVEI+KGQ +  QLS GGVAWFLG+SVLL++ASL+P F+G
Sbjct:   82 KMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQG 154          
BLAST of CF834935 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.357e-20
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = -2
Query:  102 EVFAFNGPAPERINGRLPNNGFVAALGVEISKGQDVFAQLSVGGVAWFLGSSVLLTVASLVPLFKG 299
            ++F+F+G APERINGR    GFVAA+GVE++ G+DVF+Q+  GGV WFL +S +L +A+L+P+++G
Sbjct:   90 DLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRG 155          

HSP 2 Score: 38.1206 bits (87), Expect = 7.357e-20
Identity = 17/34 (50.00%), Postives = 23/34 (67.65%), Query Frame = -3
Query:    5 KAVSVESNSNGFMTLEAEYWKGRFAIPALVALHF 106
            + +S E+ +NGF   +AE W GRFA+  LVAL F
Sbjct:  154 RGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of CF834935 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.077e-17
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = -2
Query:  102 RMSPGFFEVFAFNGPAPERINGRLPNNGFVAALGVEISKGQDVFAQLSV--GGVAWFLGSSVLLTVASLVPLFKG 320
            + +P  ++  AF+GPAPERINGRL   GFVAAL VE ++G  +  Q+ +   G+AWFL ++ + +VASL+PL +G
Sbjct:  113 KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQG 187          

HSP 2 Score: 37.7354 bits (86), Expect = 1.077e-17
Identity = 18/33 (54.55%), Postives = 23/33 (69.70%), Query Frame = -3
Query:   11 LKAVSVESNSNGFMTLEAEYWKGRFAIPALVAL 109
            L+  SVES S+G  + +AE W GRFA+  LVAL
Sbjct:  185 LQGQSVESKSSGIWSADAELWNGRFAMLGLVAL 217          
BLAST of CF834935 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.229e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  102 RMSPGFFEVFAFNGPAPERINGRLPNNGFVAALGVEISKGQDVFAQLSVG-GVAWFLGSSVLLTVASLVPLFKG 320
            + S   ++  AF+GPAPERINGRL   GFV AL VE  +G  + +QL  G G AWF  +  +L++ASLVPL +G
Sbjct:   50 KASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQG 123          

HSP 2 Score: 31.9574 bits (71), Expect = 1.229e-15
Identity = 15/33 (45.45%), Postives = 18/33 (54.55%), Query Frame = -3
Query:   11 LKAVSVESNSNGFMTLEAEYWKGRFAIPALVAL 109
            L+  S E  +   M   AE W GRFA+  LVAL
Sbjct:  121 LQGESAEGRAGAIMNANAELWNGRFAMIGLVAL 153          
BLAST of CF834935 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.694e-15
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = -2
Query:  102 RMSPGFFEVFAFNGPAPERINGRLPNNGFVAALGVEISKGQDVFAQLSVG-GVAWFLGSSVLLTVASLVPLFKG 320
            + S   ++  AF+GPAPERINGRL   GFV AL VE  +G  + +QL  G G AWF  +  +L++ASLVPL +G
Sbjct:   55 KASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQG 128          

HSP 2 Score: 31.9574 bits (71), Expect = 2.694e-15
Identity = 15/33 (45.45%), Postives = 18/33 (54.55%), Query Frame = -3
Query:   11 LKAVSVESNSNGFMTLEAEYWKGRFAIPALVAL 109
            L+  S E  +   M   AE W GRFA+  LVAL
Sbjct:  126 LQGESAEGRAGAIMNANAELWNGRFAMLGLVAL 158          
The following BLAST results are available for this feature:
BLAST of CF834935 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ELI_PEA2.696e-2167.12Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL7.357e-2054.55Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.077e-1748.00High molecular mass early light-inducible protein ... [more]
ELI6_HORVU1.229e-1550.00Low molecular mass early light-inducible protein H... [more]
ELI9_HORVU2.694e-1550.00Low molecular mass early light-inducible protein H... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06G02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834935 ID=CF834935; Name=CF834935; organism=Citrus sinensis; type=EST; length=321bp
CGGGGAAATGCAAAGCAACAAGGGCCGGGATAGCAAACCTCCCTTTCCAA
TACTCAGCTTCCAAAGTCATGAACCCATTCGAGTTAGACTCCACGCTGAC
AGCCTTTAAACAAAGGAACCAGGGACGCAACCGTGAGCAAAACACTGGAC
CCTAAAAACCAGGCAACCCCACCGACTGATAACTGGGCAAACACATCCTG
ACCCTTGGATATCTCCACCCCCAATGCAGCCACGAACCCATTGTTGGGAA
GCCTCCCGTTTATCCTCTCCGGAGCCGGCCCGTTGAACGCAAAAACCTCA
AAGAACCCCGGGCTCATCCGC
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