CF834950

Overview
NameCF834950
Unique NameCF834950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3221 contig Csv1_Contig3221:255..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.724e-23
Identity = 57/83 (68.67%), Postives = 61/83 (73.49%), Query Frame = -1
Query:   84 KDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVITXXXXXXXXXXXXXXKAKGRACR*QGEG 332
            KDDEVQ+VRGTYKGREGKVVQVYRRKWVIHIERI  EKVNG+TV VGI PSKVVIT              KAKGRA   + +G
Sbjct:   51 KDDEVQIVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKG 133          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 2.753e-21
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = -1
Query:   84 KDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVITXXXXXXXXXXXXXXKAKGRACR*QGEG 332
            KDDEVQVVRGT+KGREGKV+QVYRRKWVIHIERI  EKVNGSTV VG+N S V+IT              KA GRA   + +G
Sbjct:   51 KDDEVQVVRGTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKG 133          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.191e-20
Identity = 50/83 (60.24%), Postives = 58/83 (69.88%), Query Frame = -1
Query:   84 KDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVITXXXXXXXXXXXXXXKAKGRACR*QGEG 332
            KDDE Q+VRGTYKGREGK+ QVYRRK VIHIER+  EKVNG+TV VG+ P+KVVIT              KAKGRA   + +G
Sbjct:   51 KDDEXQIVRGTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKG 133          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   34 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CF834950 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.372e-17
Identity = 43/57 (75.44%), Postives = 52/57 (91.23%), Query Frame = -1
Query:  165 KDDEVQVVRGTYKGRE-GKVVQVYRRKWVIHIERIKSEKVNGSTVKVGINPSKVVIT 332
            KDDEVQVVRG YKG++ GKVVQVYR+K+VI+IER++ EK NG+TV VGI+PSKVVIT
Sbjct:   51 KDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CF834950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL261_ARATH1.724e-2368.6760S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH2.753e-2163.8660S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA5.191e-2060.2460S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26_MOUSE5.372e-1775.4460S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA5.372e-1775.4460S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN5.372e-1775.4460S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_CHICK5.372e-1775.4460S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_BOVIN5.372e-1775.4460S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_AILME5.372e-1775.4460S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]
RL26L_HUMAN5.372e-1775.4460S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06G16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834950 ID=CF834950; Name=CF834950; organism=Citrus sinensis; type=EST; length=332bp
ATGATTAAACAAAAACCTTAAAAACCACCTCTTATAAAAATTAGCCAACA
CTCTGCATAATATCCTCTGGGGTGAACTTGGTACCCTTCTCCTTGTCAGC
GGCAGGCACGCCCCTTGGCCTTGCGATCGAGCAAAGACTTCCTGTCCTTG
TCCAAACGGAGCTTGGTGATCACGACCTTTGATGGGTTGATTCCCACTTT
CACAGTGGATCCATTAACCTTCTCGCTTTTTATGCGCTCGATGTGAATGA
CCCACTTCCGGCGATACACTTGAACGACTTTGCCCTCGCGCCCCTTGTAG
GTCCCACGGACAACCTGGACCTCGTCGTCCTT
back to top