CF834956

Overview
NameCF834956
Unique NameCF834956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11875 contig Csv1_Contig11875:35..608. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 7.279e-75
Identity = 135/172 (78.49%), Postives = 148/172 (86.05%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            MPNP++FFDM+VGGQPAGRI+MELFAD TPRTA+NFRALCTGEKG G+SGKPLHYK SSF RVIPGFMCQ            +SIYG+KF DENF+KKHTGPGILSMANAGP TNGSQFF+CTAKTE LDGKHVVFGQVV+GMDVVKAI+KVGSSSGRT   VV+ D GQLS
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTAKKVVVEDCGQLS 172          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 8.899e-73
Identity = 130/171 (76.02%), Postives = 146/171 (85.38%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NPK+FFD+T+GG PAGR++MELFAD TP+TA+NFRALCTGEKGVGK GKPLHYKGS+F RVIPGFMCQ            +SIYG+KF DENFVKKHTGPGILSMANAGPGTNGSQFF+CTAKTE L+GKHVVFGQVV+GMDV+K  + VGSSSGR + PVVIAD GQL
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIKKAEAVGSSSGRCSKPVVIADCGQL 171          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 5.399e-70
Identity = 124/172 (72.09%), Postives = 144/172 (83.72%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            M NPK+FFDM + G PAGRI+MEL+AD TPRTA+NFRALCTGEKGVG+SGKPLHYKGS+F RVIP FMCQ            +SIYG+KF DENF+K+HTGPGILSMANAG GTNGSQFF+CT KTE LDGKHVVFG+V++GM+VV+ I+KVGS SG+T+ PV IAD GQLS
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVGSGSGKTSRPVTIADCGQLS 172          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 5.969e-69
Identity = 124/170 (72.94%), Postives = 142/170 (83.53%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            NPK++FDMTVGG+ AGRI+MEL+AD TP TA+NFRALCTGE+G+GK GKPLHYKGSSF RVIP FMCQ            +SIYGSKF DENF+KKHTGPGILSMANAG  TNGSQFF+CT KT  LDGKHVVFGQVV+G++VV+ I+KVGS SGRT+ PVVIAD GQ+S
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGRTSKPVVIADCGQIS 173          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.268e-68
Identity = 121/170 (71.18%), Postives = 143/170 (84.12%), Query Frame = 1
Query:   40 NPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            +PK+FFDMT+GG PAG+I+MEL+ D TP+TA+NFRALCTGEKGVG+SGKPLH+KGSSF RVIP FMCQ            +SIYG+KF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+ LDGKHVVFGQVV+G+DVVKAI+K+GSSSG+   PVVIAD G++S
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSSGKPTKPVVIADCGEIS 173          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 2.962e-68
Identity = 124/172 (72.09%), Postives = 141/172 (81.98%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            M  PK++FDMT+ GQPAGRI+MEL+ D TPRTA+NFRALCTGEKGVG +GKPLH+KGS F RVIP FMCQ            +SIYGSKF DENF +KHTGPGILSMANAG  TNGSQFF+CT KT+ LDGKHVVFGQVV+G+DVVKAI+KVGSSSG+   PVV+AD GQLS
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSSGKPTKPVVVADCGQLS 172          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.621e-66
Identity = 121/172 (70.35%), Postives = 138/172 (80.23%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            M NP++FFDM++ G P GRI MELFAD TP TA+NFRALCTGEKG+GK GKPLH+KGS F RVIPGFMCQ            +SIYG+KF DENF+KKHTG GILSMAN+GP TNGSQFF+CT KT  LDGKHVVFGQVV+G+DVVKAI+KVGS SG+T+  V I D GQLS
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSGKTSKVVTITDCGQLS 172          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.054e-65
Identity = 120/172 (69.77%), Postives = 138/172 (80.23%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQLS 549
            M NP++FFDMTVGG PAGRI+MEL+A+  P+TA+NFRALCTGEKGVGKSGKPLHYKGS+F RVIP FMCQ            +SIYG KFPDE FV+K   PG+LSMANAGP TNGSQFF+CT  T  LDGKHVVFGQVV+GMDVVKAI+KVG+ +G T+  V +AD GQLS
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVGTRNGSTSKVVKVADCGQLS 172          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 249.21 bits (635), Expect = 1.054e-65
Identity = 121/171 (70.76%), Postives = 136/171 (79.53%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NPK++FDMTVG + AGRI+MEL+AD  P TA+NFRALCTGE+G+GKSGKPLHYKGS+F RVIP FMCQ            +SIYG KF DENFVKKHTGPGILSM NAG  TNGSQFF+CT KT  LDGKHVVFGQVV+GMDVV+ I+KVGS SGRT+  VV  D GQL
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGRTSKKVVTCDCGQL 171          
BLAST of CF834956 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 4.143e-62
Identity = 114/171 (66.67%), Postives = 133/171 (77.78%), Query Frame = 1
Query:   34 MPNPKLFFDMTVGGQPAGRILMELFADVTPRTADNFRALCTGEKGVGKSGKPLHYKGSSFQRVIPGFMCQXXXXXXXXXXXXKSIYGSKFPDENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTERLDGKHVVFGQVVQGMDVVKAIKKVGSSSGRTNTPVVIAD*GQL 546
            M NPK+FFD+ +G   AGR++MELFADVTPRTA+NFRALCTGE G+GK+GK LHYKGS+F R+IPGFMCQ            +SIYGSKF DENF  KHTGPGILSMAN+GP TNGSQFF+CT KT  LDGKHVVFG+VV G +VVKA++ VGS  G  +  VVI D G+L
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKAMEDVGSDMGNPSERVVIEDCGEL 171          
The following BLAST results are available for this feature:
BLAST of CF834956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
CYPH_CATRO7.279e-7578.49Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC8.899e-7376.02Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU5.399e-7072.09Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH5.969e-6972.94Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH2.268e-6871.18Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH2.962e-6872.09Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP18D_ARATH3.621e-6670.35Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_MAIZE1.054e-6569.77Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYPH_BRANA1.054e-6570.76Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CP19C_ARATH4.143e-6266.67Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06G19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834956 ID=CF834956; Name=CF834956; organism=Citrus sinensis; type=EST; length=574bp
TTTGTTGTTTTCTCTCCAATCAACCAATCCCCAATGCCAAACCCCAAATT
GTTCTTCGACATGACCGTCGGCGGACAGCCGGCCGGGAGGATCTTGATGG
AGCTCTTCGCCGATGTCACCCCCCGAACCGCAGATAACTTCCGCGCCCTC
TGCACCGGCGAGAAAGGCGTCGGCAAGTCCGGCAAGCCTCTCCACTACAA
AGGCTCGTCCTTCCAACGTGTGATCCCCGGATTCATGTGCCAGGGGGGAG
ACTTCACCGCCGGAAACGGAACCGGAGGCAAATCAATCTACGGCTCGAAA
TTCCCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTC
CATGGCGAATGCCGGACCCGGAACCAACGGATCTCAATTCTTCGTCTGTA
CGGCCAAGACCGAGAGGCTCGATGGGAAGCACGTTGTGTTCGGGCAGGTC
GTCCAAGGGATGGACGTCGTCAAGGCCATCAAGAAAGTGGGGTCCAGCTC
CGGCAGGACCAACACGCCCGTCGTGATCGCTGATTGAGGTCAATTGTCTT
AGATTTGATCATGATAATGATCGC
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