CF834958 | Citrus Genome Database

Overview


Name	CF834958
Unique Name	CF834958
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	684

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

BLAST of CF834958 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 214.542 bits (545), Expect = 5.078e-66
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = -3

Query:  305 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNSLC 640
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN LC
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTN-LC 111

HSP 2 Score: 56.6102 bits (135), Expect = 5.078e-66
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1

Query:  232 LCAIHAKRVTIMPKDIQLARRIRGERA 312
            LCAIHAKRVTIMPKDIQLARRIRGERA
Sbjct:  110 LCAIHAKRVTIMPKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of CF834958 vs. ExPASy Swiss-Prot

BLAST of CF834958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 211


Match Name	E-value	Identity	Description
H33_VITVI	5.078e-66	99.11	Histone H3.3 OS=Vitis vinifera PE=2 SV=3	[more]
H33_TOBAC	5.078e-66	99.11	Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1	[more]
H33_PINPS	5.078e-66	99.11	Histone H3.3 OS=Pinus pinaster PE=2 SV=3	[more]
H33_ORYSJ	5.078e-66	99.11	Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3...	[more]
H33_ORYSI	5.078e-66	99.11	Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_...	[more]
H33_ORYCO	5.078e-66	99.11	Histone H3.3 OS=Oryza coarctata PE=2 SV=3	[more]
H33_MEDSA	5.078e-66	99.11	Histone H3.3 OS=Medicago sativa PE=1 SV=2	[more]
H33_LOLTE	5.078e-66	99.11	Histone H3.3 OS=Lolium temulentum PE=2 SV=2	[more]
H33_LOLMU	5.078e-66	99.11	Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=...	[more]
H33_GOSHI	5.078e-66	99.11	Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS02_06G23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06G23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF834958 ID=CF834958; Name=CF834958; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTAAATTGCCGAAAATCCATACACGCAAGTCCCCT
ATAACCACCGATGAAGGTAAAGTGAAACAAGATAAGCTCCACAATAAACA
TTTATCTAGCAAATATCAAATGCCAAATATTCTTCAATCCATCATATCAT
TCTTTACATGTAAAAACCGAAATAAAGAAAAACTAGCAAACTAAATAGGA
AACTGACGACTACCTAAGGAATCACAAATTAAGCACGCTCGCCTCGGATT
CGCCTTGCCAGTTGAATATCCTTGGGCATAATGGTGACTCGCTTGGCATG
GATAGCACAAAGAGTTGGTGTCCTCGAACAGACCCACGAGATAAGCCTCT
GCCGCTTCCTGCAGCGCAAGAACCGCGTGGCTTTGGAACCTCAAATCTGT
CTTGAAATCTTGAGCAATTTCACGAACCAGCCGCTGGAAAGGCAGCTTGC
GGATCAAAAGCTCAGTGCTCTTTTGATATTTGCGGATTTCACGTAGGGCG
ACAGTTCCTGGACGGTAACGATGGGGCTTCTTGACTCCACCAGTTGTTGG
AGCAGATTTTCTTGCAGCCTTTGTGGCGAGCTGCTTCCTCGGAGCCTTTC
CTCCAGTTGACTTGCGCGCGGTTTGCTTCGTACGGGCCATTACTCTTTAA
TCACCAACACAAACTGCAAAATGCACAGATCTGA