CF834981

Overview
NameCF834981
Unique NameCF834981
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length411
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.057e-12
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  SEG  GT+ F QE    T +  +LA LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSEGVTGTIFFTQEGNGPTTVTGSLAGLKPGLHGFHVHALG 50          

HSP 2 Score: 40.817 bits (94), Expect = 1.057e-12
Identity = 21/43 (48.84%), Postives = 26/43 (60.47%), Query Frame = -2
Query:   33 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNI 161
            C  +G HFNP N  H      +E+RH GDLGN+NV  GD G +
Sbjct:   56 CLSTGAHFNPNNNEHGA--PEDENRHAGDLGNVNV--GDDGTV 94          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 51.9878 bits (123), Expect = 8.556e-12
Identity = 26/49 (53.06%), Postives = 32/49 (65.31%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQE-DGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  SEG  GT+ F QE +G  T +  +L+ LK G HGFHVH  G
Sbjct:    3 KAVAVLSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALG 51          

HSP 2 Score: 38.891 bits (89), Expect = 8.556e-12
Identity = 20/44 (45.45%), Postives = 25/44 (56.82%), Query Frame = -2
Query:   30 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNIK 161
            C  +G H+NP  K H      +EHRH GDLGN+ V  G+ G  K
Sbjct:   57 CMSTGPHYNPHGKDHGA--PDDEHRHAGDLGNVTV--GEDGTAK 96          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC4_MAIZE (Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2)

HSP 1 Score: 52.7582 bits (125), Expect = 1.874e-11
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  SEG KGT+ F QE    T +  +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSEGVKGTIFFTQEGDGPTTVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 36.965 bits (84), Expect = 1.874e-11
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = -2
Query:   33 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNI 161
            C  +G H+NP +K H      +E+RH GDLGN+      + NI
Sbjct:   56 CMSTGPHYNPASKEHGA--PEDENRHAGDLGNVTAGADGVANI 96          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.433e-11
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL GSEG +GTV F QE    T I  +L+ LK G HGFHVH  G
Sbjct:    3 KAVAVLTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALG 50          

HSP 2 Score: 34.2686 bits (77), Expect = 2.433e-11
Identity = 16/35 (45.71%), Postives = 20/35 (57.14%), Query Frame = -2
Query:   57 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINV 161
            C  +G HFNP  K H      + +RH GDLGN+ V
Sbjct:   56 CMSTGPHFNPAGKEHG--APEDGNRHAGDLGNVTV 88          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 2.433e-11
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  SEG KGT+ F QE    T +  +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 37.7354 bits (86), Expect = 2.433e-11
Identity = 18/43 (41.86%), Postives = 23/43 (53.49%), Query Frame = -2
Query:   33 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNI 161
            C  +G HFNP  K H      +E+RH GDLGNI      + N+
Sbjct:   56 CMSTGPHFNPTGKEHGA--PQDENRHAGDLGNITAGADGVANV 96          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 49.2914 bits (116), Expect = 3.159e-11
Identity = 23/48 (47.92%), Postives = 28/48 (58.33%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  S    GT++F QE    T +   LA LK G HGFH+H  G
Sbjct:    3 KAVAVLSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALG 50          

HSP 2 Score: 39.6614 bits (91), Expect = 3.159e-11
Identity = 22/43 (51.16%), Postives = 25/43 (58.14%), Query Frame = -2
Query:   33 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNI 161
            C  +G HFNP  K H      +E RH GDLGNINV  GD G +
Sbjct:   56 CISTGPHFNPNGKEHGA--PEDETRHAGDLGNINV--GDDGTV 94          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 4.102e-11
Identity = 24/48 (50.00%), Postives = 29/48 (60.42%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+ VL  SEG  GTV F QE    T +  N++ L+ G HGFHVH  G
Sbjct:    3 KAVVVLSSSEGVSGTVQFTQEGSGPTTVTGNVSGLRPGLHGFHVHALG 50          

HSP 2 Score: 36.5798 bits (83), Expect = 4.102e-11
Identity = 21/41 (51.22%), Postives = 23/41 (56.10%), Query Frame = -2
Query:   39 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLG 161
            C  +G HFNP  K H      +E RH GDLGNI V  GD G
Sbjct:   56 CMSTGPHFNPAGKEHGA--PEDETRHAGDLGNITV--GDDG 92          
BLAST of CF834981 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 51.6026 bits (122), Expect = 4.102e-11
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = -3
Query:  170 KAIAVLDGSEGFKGTVSFYQEDGHHTVIAVNLANLKAGSHGFHVHESG 313
            KA+AVL  S+G KGT+ F QE    T +  +++ LK G HGFHVH  G
Sbjct:    3 KAVAVLGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALG 50          

HSP 2 Score: 36.965 bits (84), Expect = 4.102e-11
Identity = 17/43 (39.53%), Postives = 24/43 (55.81%), Query Frame = -2
Query:   33 C*YSGKHFNPFNKSHSDIHGHEEHRHYGDLGNINVDYGDLGNI 161
            C  +G H+NP +K H      +E+RH GDLGN+      + NI
Sbjct:   56 CMSTGPHYNPASKEHGA--PEDENRHAGDLGNVTAGADGVANI 96          
The following BLAST results are available for this feature:
BLAST of CF834981 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SODC_SOYBN1.057e-1254.17Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_SOLCS8.556e-1253.06Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC4_MAIZE1.874e-1152.08Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SOD... [more]
SODC_ZANAE2.433e-1158.33Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC2_ORYSJ2.433e-1152.08Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]
SODC_PEA3.159e-1147.92Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC1_MESCR4.102e-1150.00Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC5_MAIZE4.102e-1150.00Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06H14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834981 ID=CF834981; Name=CF834981; organism=Citrus sinensis; type=EST; length=411bp
TGCAGCAGATACTGACCATCAGGACCCCTTTTGATATTTCCTAAATCACC
ATAATCAACATTGATATTTCCTAAATCACCATAATGACGATGCTCCTCAT
GGCCGTGAATGTCACTATGAGATTTGTTAAATGGGTTAAAATGTTTCCCA
CTGTACTAGCACAAATGAATCCGGATTCGTGGACATGGAATCCATGAGAA
CCGGCCTTAAGATTAGCGAGGTTTACAGCTATGACTGTATGATGGCCATC
TTCCTGGTAGAAGGAAACAGTTCCCTTGAAACCCTCACTGCCGTCAAGAA
CAGCAATTGCTTTGCTATGTGGTCTTGAATTGAGCTGCAATATTGACAAA
ACAAAATAAAACAGCTAAAAGGGCTACCAACTTTAGTGAAGCTGCTTTCT
CCATTATCAAA
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