CF834991

Overview
NameCF834991
Unique NameCF834991
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6870 contig Csv1_Contig6870:43..532. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Bos taurus GN=NDUFA2 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.717e-17
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = 3
Query:   57 RGQLSRSMKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 317
            RG+L   ++E+ I LCQ SP S   R F+++ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   11 RGKLG--LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVL 95          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo pygmaeus GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 320
            ++E+ I LCQ SP S   R F+++ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Pongo abelii GN=NDUFA2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 39/81 (48.15%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 320
            ++E+ I LCQ SP S   R F+++ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE++++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVLK 96          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Macaca fascicularis GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 39/80 (48.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 317
            ++E+ I LCQ SP S   R F+++ Y ELK  NP LPILIRECS ++P+LWARY  G EK + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVPLNNFSADQVTRALENVL 95          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Homo sapiens GN=NDUFA2 PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 317
            ++E+ I LCQ SP S   R F+++ Y ELK  NP LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Mus musculus GN=Ndufa2 PE=1 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 35/80 (43.75%), Postives = 56/80 (70.00%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 317
            ++E+ + LCQ SP S   R F+ + Y ELK  +P LPILIRECS ++P+LWARY  G EK + L+ L+  ++ +A+++++
Sbjct:   16 LREIRVHLCQRSPGSQGVRDFIVQRYVELKKAHPNLPILIRECSEVQPKLWARYAFGQEKTVSLNNLSADEVTRAMQNVL 95          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 OS=Gorilla gorilla gorilla GN=NDUFA2 PE=3 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 3.580e-15
Identity = 37/80 (46.25%), Postives = 54/80 (67.50%), Query Frame = 3
Query:   78 MKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLV 317
            ++E+ I LCQ SP S   R F+++ Y ELK  N  LPILIRECS ++P+LWARY  G E  + L+  +  Q+ +ALE+++
Sbjct:   16 LREIRIHLCQRSPGSRGVRDFIEKRYVELKKANSDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENVL 95          
BLAST of CF834991 vs. ExPASy Swiss-Prot
Match: NDUA2_NEUCR (NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS=Neurospora crassa GN=nuo-10.5 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.566e-13
Identity = 36/88 (40.91%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   57 RGQLSRSMKELTILLCQTSPSSSSGR*FVKRNYKELKTLNPKLPILIRECSGIEPQLWARYDMGVEKGIGLDGLNEAQIAKALEDLVR 320
            R   ++ +KE+  L CQT   S++ R F+ RNY  +K  NP  PILIR+ SG  P+++AR++ G EK   L+GL++ QI + +  LV+
Sbjct:    4 RFAFNKGLKEVRFLFCQTGEHSAATRSFLLRNYPAMKKDNPATPILIRDASGTLPKVYARFEFGKEKSQSLEGLSDQQIEETVSSLVK 91          
The following BLAST results are available for this feature:
BLAST of CF834991 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NDUA2_BOVIN1.717e-1748.28NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONPY3.825e-1748.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_PONAB3.825e-1748.15NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MACFA6.524e-1748.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_HUMAN3.238e-1647.50NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_MOUSE2.741e-1543.75NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_GORGO3.580e-1546.25NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA2_NEUCR2.566e-1340.91NADH-ubiquinone oxidoreductase 10.5 kDa subunit OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06H19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834991 ID=CF834991; Name=CF834991; organism=Citrus sinensis; type=EST; length=499bp
GGAAAACAAGGGACACACATATAGGGAGACAAAGAGAATCTCTTGGATAT
ATCAAGAGAGGACAATTATCTCGGAGCATGAAGGAACTGACGATCTTACT
CTGCCAGACTTCTCCTTCAAGCTCCTCCGGGAGATGATTTGTAAAGAGGA
ACTACAAGGAGTTGAAGACTTTAAACCCCAAACTTCCTATCTTGATTCGT
GAGTGCAGTGGGATTGAGCCCCAGTTATGGGCTAGATATGATATGGGTGT
TGAGAAGGGCATTGGTTTGGATGGTCTGAATGAGGCACAGATCGCAAAGG
CACTCGAAGACCTTGTCAGAGCTGGGGAAGCCCTTAAGCGTTGATATGGC
TACTCTTTGATCCATATGAGATGAAATAAATGTGGTAGAAAAATCTTCCT
ATGACAGTTTGCTCTTTTATTTAGCAATCATTTTGATGTACTTTGCATGG
TTGTCCAATATCTTGATTATTATCTGCATTAGCAAAAAAAAAAAAAAAA
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