CF834993

Overview
NameCF834993
Unique NameCF834993
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834993_ssr35 microsatellite CF834993_ssr35:35..50. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.351e-65
Identity = 118/145 (81.38%), Postives = 130/145 (89.66%), Query Frame = 3
Query:  204 MKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHSFVM 638
            MKERQRW  EEDALLRAYV+Q+GP+EW  VS+RMN PLNRDAKSCLERWKNYLKPGIKKGSLT+EEQ LVI LQ KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE+K+S + V+PIDE KYD+ILE+FAEKLV   S V+
Sbjct:    1 MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEPIDESKYDRILESFAEKLVKERSNVV 145          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 2.915e-60
Identity = 112/150 (74.67%), Postives = 126/150 (84.00%), Query Frame = 3
Query:  204 MKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE--QKDSIRIVDPIDEH-------KYDQILETFAEKLVNNH 626
            M+ERQRWR EEDA+L AYV+QYGP+EWS VSQRMN PL+RDAKSCLERWKNYL+PGIKKGSLTD+EQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE   +D  R+  P+D         +YD +LE FA+KLVN+H
Sbjct:    6 MRERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDRRRLPPPLDGDERGCAGGRYDWLLEDFADKLVNDH 155          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.497e-59
Identity = 110/141 (78.01%), Postives = 121/141 (85.82%), Query Frame = 3
Query:  204 MKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIR---IVDPIDEHKYDQILETFAEKLV 617
            MKERQRWR EEDA+LRAYV+QYGP+EW  VSQRMN  L+RDAKSCLERWKNYL+PGIKKGSLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +DS R      P +  +Y+ +LE FAEKLV
Sbjct:    1 MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPEPSPDERGRYEWLLENFAEKLV 141          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.564e-21
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 3
Query:  192 LLLEMKERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 539
            L+ E   +  W  +ED LL  +V  +G + W FV++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:    3 LVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.483e-21
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 539
            W  +ED LL  +V  +G + W F+++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:   12 WTEQEDILLVNFVHLFGDRRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.851e-20
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 3
Query:  195 LLEMKE---RQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 503
            LL MK+   + +W+ EED +L+ YV QYG + W+ V +R   P N    SC  RW N+LKP +KKG  TDEE+  V+ L A  GNKW ++A E PGRT   +  +W
Sbjct:    9 LLAMKKTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHN--PASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFW 112          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 43/112 (38.39%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  210 ERQRWRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDS 545
            +R  W+ EED +L++YV+ +G   W+ +S+R    L R  KSC  RWKNYL+P IK+GS++ +EQ L+I +    GN+W  IA  +PGRT   +  +W     K+   ++ +
Sbjct:   13 KRGLWKPEEDMILKSYVETHGEGNWADISRRSG--LKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQN 122          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.569e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 530
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.569e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  222 WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 530
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CF834993 vs. ExPASy Swiss-Prot
Match: MYBA1_ORYSJ (Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.464e-19
Identity = 44/118 (37.29%), Postives = 70/118 (59.32%), Query Frame = 3
Query:  195 LLEMKERQR---WRTEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQHLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 539
            ++ ++E  R   W  +ED  L   V+ +G + W FV++     LNR  KSC  RW NYL PG+K G ++ +E+HL+I L A+ GN+W +IA  +PGRT   +  +W     K+ +E++
Sbjct:    1 MVTVREEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKHGRMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQERR 116          
The following BLAST results are available for this feature:
BLAST of CF834993 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
AS1_ARATH1.351e-6581.38Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ2.915e-6074.67Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE5.497e-5978.01Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYB59_ARATH1.564e-2141.38Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH3.483e-2142.45Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MY104_ARATH3.851e-2045.28Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB82_ARATH5.030e-2038.39Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
GAM1_ORYSJ6.569e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI6.569e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
MYBA1_ORYSJ1.464e-1937.29Myb-related protein MYBAS1 OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06H21_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834993 ID=CF834993; Name=CF834993; organism=Citrus sinensis; type=EST; length=647bp
CTTGTGCTCTCCTTTTAGTGCTCTCAGNAGNTTCGTTTGTTTGTTTGTTT
CCTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGAAGAAGCTAAGGTTGC
CGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAACACTTGAAGTTAAGA
AATATACAGTATGAGGAATTTTACACAATGGACAGCGTTGTTTACTCCTG
GAAATGAAGGAGAGACAGCGTTGGAGAACTGAAGAGGATGCTTTATTACG
TGCATATGTGAAACAATATGGCCCGAAGGAGTGGAGTTTTGTATCACAGC
GCATGAACACACCCCTAAACAGGGATGCAAAATCTTGCTTAGAAAGGTGG
AAGAACTACCTCAAACCAGGCATCAAGAAAGGATCCCTTACTGACGAGGA
GCAGCATCTTGTCATCCATCTCCAAGCAAAACACGGCAACAAGTGGAAGA
AAATTGCAGCTGAAGTTCCCGGTCGAACTGCTAAGAGACTGGGCAAGTGG
TGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACAGAAGGATTCCATAAG
AATAGTTGATCCAATTGATGAGCACAAGTACGATCAGATTCTAGAGACTT
TTGCAGAGAAGCTAGTAAACAATCATTCATTTGTCATGGCCACTTCT
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