CF835015

Overview
NameCF835015
Unique NameCF835015
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length647
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6651 contig Csv1_Contig6651:110..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: PPA1_SOLLC (Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 62/146 (42.47%), Postives = 90/146 (61.64%), Query Frame = 2
Query:  209 LSCLSWRL*VETNNDIGWATVPEKCAGYVGHYMLGQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIEFLTGRPEDQKNVTEANLKHA 646
            L C +WR  VETNN   W T+PE+CA YV  YM+G  Y+M+ + VS+EA  YA+S+ L  DG ++W+F++DET LSNLPYY+ + +G++ ++   F++WV  G A                G K+  LTGR E  ++VT  NL +A
Sbjct:   41 LKCTTWRFVVETNNLSPWKTIPEECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYSDHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSERHRSVTVENLMNA 186          
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: VSPA_SOYBN (Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  203 PGLSCLSWRL*VETNNDIGWATVPEKCAGYVGHYMLGQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIEFLTGRPEDQKNVTEANLKHA 646
            P + C SWRL VE +N  G+ T+PE+C      Y+ G+QYR DS+ V+ +A  YA+ L++     + +VF+ID T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KI FL+GR  D++ VTEANLK A
Sbjct:   38 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKA 183          
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: S25K_SOYBN (Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.194e-29
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 2
Query:  203 PGLSCLSWRL*VETNNDIGWATVPEKCAGYVGHYMLGQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIEFLTGRPEDQKNVTEANLKHA 646
            P + C SWRL VE +N  G+ T+PE+C      Y+ G+QYR DS+ V+ +A  YA+ L++     + +VF+ID T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KI FL+GR  D++ VTEANLK A
Sbjct:   35 PEVKCASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARDLEV--HPKDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLGFKIIFLSGRTLDKQAVTEANLKKA 180          
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: VSPB_SOYBN (Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.464e-27
Identity = 65/155 (41.94%), Postives = 93/155 (60.00%), Query Frame = 2
Query:  182 GSRNNDVPGLSCLSWRL*VETNNDIGWATVPEKCAGYVGHYMLGQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKAXXXXXXXXXXXXXXXXGIKIEFLTGRPEDQKNVTEANLKHA 646
            G R+++V    C S+RL VE +N   + T+PE+C      Y+ G+Q+R DS+ V+ +A  YA   ++    N+I++F ID T LSN+PYY K+G+GV+ +N TL++EWVN G A                G KI FL+GR  D+  VTEANLK A
Sbjct:   35 GERSSEV---KCASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREV--HHNDIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLGFKIVFLSGRYLDKMAVTEANLKKA 184          
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: VSP2_ARATH (Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.942e-21
Identity = 57/147 (38.78%), Postives = 82/147 (55.78%), Query Frame = 2
Query:  212 SCLSWRL*VETNNDIGWATVPEKCAGYVGHYML-GQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTG-KAXXXXXXXXXXXXXXXXGIKIEFLTGRPEDQKNVTEANLKHA 646
            +C SW L VET+N I + TVP  C  YV  Y++  +QY+ DS+ V  EA  YA+ L L  D  N+W+F++D+T LS++PYYAK G+G +  +P  +  W+ TG                   GI+   L+ R +  KNVT  NL+ A
Sbjct:   51 NCRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIELGIEPIILSDRWKLWKNVTLDNLEAA 197          
BLAST of CF835015 vs. ExPASy Swiss-Prot
Match: VSP1_ARATH (Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.729e-20
Identity = 45/105 (42.86%), Postives = 69/105 (65.71%), Query Frame = 2
Query:  212 SCLSWRL*VETNNDIGWATVPEKCAGYVGHYML-GQQYRMDSEVVSNEAILYAQSLKLAGDGNNIWVFNIDETSLSNLPYYAKNGFGVKPYNPTLFNEWVNTGKA 523
            +C SW L VET+N I + TVP  C  YV  Y++  +QY+ DS+ V+ EA  YA+ L L  D  N+W+F++D+T LS++PYYAK G+G +   P  +  W+ +G++
Sbjct:   56 NCRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKNDTVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGES 160          
The following BLAST results are available for this feature:
BLAST of CF835015 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PPA1_SOLLC7.003e-3042.47Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1... [more]
VSPA_SOYBN1.194e-2944.59Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE... [more]
S25K_SOYBN1.194e-2944.59Stem 31 kDa glycoprotein (Fragment) OS=Glycine max... [more]
VSPB_SOYBN9.464e-2741.94Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE... [more]
VSP2_ARATH5.942e-2138.78Vegetative storage protein 2 OS=Arabidopsis thalia... [more]
VSP1_ARATH1.729e-2042.86Vegetative storage protein 1 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS02_06I13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835015 ID=CF835015; Name=CF835015; organism=Citrus sinensis; type=EST; length=647bp
TAATGAGCATGCGATGGGTGTCACTGCCATTATTCTTCTTTTTTCTGGCG
TACCATATCAGCAACATCCCATGGATTTAGCATGGACATCCGCCATCTTT
TTCTGGCTACCATATCAGCAACATCCCATGGATTTAACATGGACATCCCC
CATCAGATTCATCTTCGGCCGACCGAAAGCCGGTTCCCGGAACAACGATG
TTCCCGGCTTGTCCTGCCTGAGTTGGCGACTCTGAGTGGAAACTAATAAC
GATATAGGATGGGCGACTGTTCCCGAAAAATGTGCAGGCTACGTGGGGCA
TTACATGTTAGGCCAGCAGTACCGCATGGACTCTGAAGTGGTATCTAATG
AGGCCATTCTCTATGCGCAGAGCCTCAAGCTTGCTGGCGACGGCAATAAC
ATTTGGGTATTCAACATAGATGAAACCTCGCTATCTAATTTGCCATATTA
TGCTAAGAATGGATTCGGGGTGAAGCCATACAACCCTACTTTGTTTAATG
AATGGGTGAACACCGGAAAAGCACCACCGCTGCCAGAGAGCCTTAAGCTT
TACAAAAAATTATTATTGCTTGGAATTAAGATTGAATTCCTCACGGGAAG
ACCAGAAGATCAGAAAAATGTTACAGAAGCTAATTTAAAGCATGCTG
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