CF835039

Overview
NameCF835039
Unique NameCF835039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9984 contig Csv1_Contig9984:1..535. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_TOBAC (Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.068e-33
Identity = 69/78 (88.46%), Postives = 75/78 (96.15%), Query Frame = -1
Query:  338 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARL 571
            ASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLALIIHGSK++R+HYLNTEEFIDAVAD+L+ARL
Sbjct:  333 ASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIHGSKLSRDHYLNTEEFIDAVADELKARL 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_SOYBN (Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 5.300e-33
Identity = 68/79 (86.08%), Postives = 76/79 (96.20%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAW+RGLAHRAKLD+NA+LLDFTEKLEAACIG VE+GKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L ARLS
Sbjct:  334 ASIFAWTRGLAHRAKLDDNAKLLDFTEKLEAACIGVVEAGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELSARLS 412          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_SOLTU (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.181e-32
Identity = 70/79 (88.61%), Postives = 75/79 (94.94%), Query Frame = -1
Query:  338 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLAL-IIHGSKMTREHYLNTEEFIDAVADDLRARL 571
            ASIFAW+RGLAHRA LDNN RLLDFTEKLEAACIG VESGKMTKDLAL IIHGSK++REHYLNTEEFIDAVAD+L+ARL
Sbjct:  333 ASIFAWTRGLAHRATLDNNERLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADELKARL 411          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHP_MEDSA (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.630e-32
Identity = 66/79 (83.54%), Postives = 75/79 (94.94%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAW+RGLAHRAKLD+NA LLDFTEKLEAACIG VESGKMTKDLALI+HGSK++REHYLNTEEFIDAVA +L+ ++S
Sbjct:  354 ASIFAWTRGLAHRAKLDDNATLLDFTEKLEAACIGVVESGKMTKDLALILHGSKLSREHYLNTEEFIDAVAAELKTKIS 432          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_DICDI (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium discoideum GN=idhC PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.687e-18
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGS--KMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAW+RGL +RAKLDNN +LL F   LEA+CI  VESG MTKDLA+ + GS   + R  YLNTEE+I+ VA+ L ++L+
Sbjct:  330 ASIFAWTRGLEYRAKLDNNDKLLKFCHALEASCIDAVESGFMTKDLAICVKGSVENVKRTDYLNTEEYINKVAELLVSKLT 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_RAT (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 47/80 (58.75%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAWSRGLAHRAKLDNN  L  F   LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  331 ASIFAWSRGLAHRAKLDNNTELSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_MOUSE (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.816e-18
Identity = 47/80 (58.75%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAWSRGLAHRAKLDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  331 ASIFAWSRGLAHRAKLDNNTELSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_MICOH (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster GN=IDH1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  331 ASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDHC_MICME (Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus GN=IDH1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 46/80 (57.50%), Postives = 58/80 (72.50%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHG-SKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAWSRGLAHRA+LDNN  L  F + LE  CI T+E+G MTKDLA  I G   + R  YLNT EF+D + ++L+A+L+
Sbjct:  331 ASIFAWSRGLAHRARLDNNTELSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMDKLGENLKAKLA 410          
BLAST of CF835039 vs. ExPASy Swiss-Prot
Match: IDH_MYCTU (Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis GN=icd PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.401e-17
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = -1
Query:  335 ASIFAWSRGLAHRAKLDNNARLLDFTEKLEAACIGTVESGKMTKDLALIIHGSKMTREHYLNTEEFIDAVADDLRARLS 571
            ASIFAW+RGL HR KLD    ++DF  KLE+  I TVESGKMTKDLA++I       + +LN+EEF+DA+AD+L   L+
Sbjct:  334 ASIFAWTRGLQHRGKLDGTPEVIDFAHKLESVVIATVESGKMTKDLAILIG----PEQDWLNSEEFLDAIADNLEKELA 408          
The following BLAST results are available for this feature:
BLAST of CF835039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
IDHC_TOBAC1.068e-3388.46Isocitrate dehydrogenase [NADP] OS=Nicotiana tabac... [more]
IDHC_SOYBN5.300e-3386.08Isocitrate dehydrogenase [NADP] OS=Glycine max GN=... [more]
IDHC_SOLTU1.181e-3288.61Isocitrate dehydrogenase [NADP] OS=Solanum tuberos... [more]
IDHP_MEDSA2.630e-3283.54Isocitrate dehydrogenase [NADP], chloroplastic (Fr... [more]
IDHC_DICDI3.687e-1859.26Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dic... [more]
IDHC_RAT4.816e-1858.75Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rat... [more]
IDHC_MOUSE4.816e-1858.75Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus... [more]
IDHC_MICOH8.214e-1857.50Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDHC_MICME8.214e-1857.50Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mic... [more]
IDH_MYCTU1.401e-1755.70Isocitrate dehydrogenase [NADP] OS=Mycobacterium t... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06J04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF835039 ID=CF835039; Name=CF835039; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTGCAATAATTAGGTTTTGTGTGCGTACCCTTTAA
AACTTTGGCAAAAGAGGGGCAGCTCAAATAAACCCTTTACGTAAATTTGG
CAGCAATAGTTTTGTTTATAACAAGCCATGTTCAAGACATTTGCTTGCAT
GAAAATGAGAGTTTGTCGATCCACAGGAAAGCAGTCTATTGTAGCAATTA
GAAGAGAACCAAATCCCAATCCCCAATTTTCCCCTCTTCAATTATTTCTT
CTCAGCATAATATGAAAAAGATAACCAAAGGAAGCTTCCCCAAGTCTTTA
CCTTTGAATGTGTAGCATAAAATCATGCTTTGCCAGAGAGTCTTGCTCTT
AGATCGTCGGCCACAGCATCAATGAACTCTTCAGTATTCAGATAGTGTTC
CCTAGTCATCTTAGATCCATGGATAATAAGTGCAAGATCCTTGGTCATCT
TCCCAGATTCAACAGTGCCAATACATGCAGCTTCTAGTTTCTCAGTAAAA
TCCAATAGCCTAGCATTGTTGTCCAACTTCGCCCTATGTGCAAGCCCTCG
TGACCAAGCAAAGATGGAGGC
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